View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_low_43 (Length: 342)
Name: NF3090_low_43
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 13 - 329
Target Start/End: Complemental strand, 52516126 - 52515810
Alignment:
| Q |
13 |
aatatagtactaggaataaaagtactagaatgaaaattggggcagcttcaattgtagaaaagattgtctaatatcagtttgtttgacaacgtacaagtac |
112 |
Q |
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| T |
52516126 |
aatatagtactaggaataaaagtactagaatgaaaattggggcagcttcaattgtagaaaagattgtcaaatatcagtttgtttgacaacgtgtaagtac |
52516027 |
T |
|
| Q |
113 |
tagtaacaagtttgtttgacatcatgtaagtactagtaacgagagttgaccagataaaggatattccaatagtcagggtgacaaaagtaagccaaactag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
52516026 |
tagtaacaagtttgtttgacatcatgtaagtactagtaacgagagttgaccagataaaggatattccattagtcagggtgacaaaagtaagccaaactag |
52515927 |
T |
|
| Q |
213 |
tacggagagatttagtgataaacgttctacctttaaacttaatataggattgcgaattatagtgctgtttgattcttgcagtcaaccccacctagtggta |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52515926 |
tacggagagatttagtgataaacgttctacctttaaacttaatataggattgcgaattatagtgctgtttgattcttgcagtcaaccccacctagtggta |
52515827 |
T |
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| Q |
313 |
tagggtttgatatatgt |
329 |
Q |
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||||||||||||||||| |
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| T |
52515826 |
tagggtttgatatatgt |
52515810 |
T |
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