View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_low_44 (Length: 336)
Name: NF3090_low_44
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 20 - 317
Target Start/End: Complemental strand, 18345230 - 18344933
Alignment:
| Q |
20 |
attctctcagaggcagaaaatctcaatatacgatataatgctcgtggagagaatgtaatgatgccggaggttccatttgaggattttcgggttggttcac |
119 |
Q |
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| T |
18345230 |
attctctcagaggcagaaaatctcaatatacggtataatgctcgtggagagaatgtaatgatgccggaggttccatttgaggattttcgggttggttcac |
18345131 |
T |
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| Q |
120 |
aattttttatcttgaaccggaaacatacaaatgttgtgttgagagatcaaaagctatggaacaagtttcagattccatgtacaaataagtattattgtta |
219 |
Q |
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| T |
18345130 |
aattttttatcttgaaccggaaacatacaaaggttgtgttgagagatcaaaagctatggaacaagtttcagattccatgtacaaataagtattattgtta |
18345031 |
T |
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| Q |
220 |
cccagaggagcattatttttcgactcttctatcaatggaggatttgaaggggtatactggttttacactgactagagttaattggaccggtgctgtct |
317 |
Q |
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| T |
18345030 |
tccagaggagcattatttttcgactcttctatcaatggaggatttgaaggggtgtactggttttacactgactagagttaattggaccggtgctgtct |
18344933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 53 - 306
Target Start/End: Complemental strand, 18340039 - 18339786
Alignment:
| Q |
53 |
tataatgctcgtggagagaatgtaatgatgccggaggttccatttgaggattttcgggttggttcacaattttttatcttgaaccggaaacatacaaatg |
152 |
Q |
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| T |
18340039 |
tataacgctcgtggagagaatgttatgttgccggaggttccatttgaggattttcgggttggttcgcagttttttatcttgaataggaagcatgcaaagg |
18339940 |
T |
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| Q |
153 |
ttgtgttgagagatcaaaagctatggaacaagtttcagattccatgtacaaataagtattattgttacccagaggagcattatttttcgactcttctatc |
252 |
Q |
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| T |
18339939 |
ttgtggtgagagattataagctatggaagaagtttcggattccttgtgtaaatttggattcttgttatccagaagagcattattttcccactcttttgtc |
18339840 |
T |
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| Q |
253 |
aatggaggatttgaaggggtatactggttttacactgactagagttaattggac |
306 |
Q |
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| T |
18339839 |
tatggaggatctgaatgggtgtactggttttacactgacgagagttaattggac |
18339786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 53 - 261
Target Start/End: Original strand, 18303657 - 18303865
Alignment:
| Q |
53 |
tataatgctcgtggagagaatgtaatgatgccggaggttccatttgaggattttcgggttggttcacaattttttatcttgaaccggaaacatacaaatg |
152 |
Q |
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||||||||||||||| || |||||||||||||||||||| |||| |||||||||| || || ||||| |||||| |||||||||||||| |||| | |
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| T |
18303657 |
tataatgctcgtggaaaggatgtaatgatgccggaggtttcattcaaggattttcgcaaaggctcgcaattctttatcctgaaccggaaacatgcaaagg |
18303756 |
T |
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| Q |
153 |
ttgtgttgagagatcaaaagctatggaacaagtttcagattccatgtacaaataagtattattgttacccagaggagcattatttttcgactcttctatc |
252 |
Q |
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|||| || ||||||||||| | ||||| ||||||| ||||||||||| | ||| ||||| |||||||| || |||||||| ||| ||||||||||||| |
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| T |
18303757 |
ttgttctgcgagatcaaaagttgtggaagaagtttcggattccatgtatagatacgtattcctgttacccggaagagcattactttccgactcttctatc |
18303856 |
T |
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| Q |
253 |
aatggagga |
261 |
Q |
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|||||||| |
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| T |
18303857 |
gatggagga |
18303865 |
T |
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