View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_low_46 (Length: 315)
Name: NF3090_low_46
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 9 - 297
Target Start/End: Complemental strand, 46736861 - 46736573
Alignment:
| Q |
9 |
ttcaatatctaatatagaatatatatgaagtcaactagtaaattgacaagcaagccaacaaatgacagttgaaggctgcaacatacctccgatatttcca |
108 |
Q |
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| T |
46736861 |
ttcaatatctaatataaaatatatatgaagtcaaccagtaaattgacaagcaagccaacaaatgacagttgaaggctgcaacatacctccgatatttcca |
46736762 |
T |
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| Q |
109 |
tagacaacaactccgatatttccataaacgacaatgacttacttaatgtacataataatactcattaaaaattgagtatgactattatgggccacgagca |
208 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
46736761 |
tagacaacaactccgatatttccatagacgacaatgacttacttaatgtacataattatactcattaaaaattgagtatgattattatgggccacgagca |
46736662 |
T |
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| Q |
209 |
ggtttaaaacaaaaacaaaatggagtctggtcttctcttatcattccgcctcctttgcttgtatcaatttcttccaacattgtcaccac |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
46736661 |
ggtttaaaacaaaaacaaaatggagtctggtcttctcttatcattccgcctcctttgcttgtatcaattttttccaacattgtcaccac |
46736573 |
T |
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