View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3090_low_48 (Length: 311)
Name: NF3090_low_48
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_low_48 |
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| [»] scaffold0428 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 35 - 310
Target Start/End: Complemental strand, 33385965 - 33385690
Alignment:
| Q |
35 |
cttttgttatgaagggaggtttatttaactttgaatcttctatggataaatgtaactgaagaaaagaataaagatccctctcctgaaagtcctccaactg |
134 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33385965 |
cttttgttatgaagggagttttatttaactttgaatcttctatggataaatgtaactgaagaaaagaataaagttccctctcctgaaagtcctccaactg |
33385866 |
T |
|
| Q |
135 |
aagaagtgccagaacaaacaccagtagcagtacaatttgaaggtgaagaagttgcaattgcattaaaaaacaaacaacagcgtatctaactctaatggac |
234 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33385865 |
aagaagtgccagaacaaacaccagtagcagtacaagttgaaggtgaagaagttgcaattgcattaaaaaacaaacaacagcgtatctaactctaatggac |
33385766 |
T |
|
| Q |
235 |
aaaccggaattacagcgtcagatgaaggcttgagcaaaggttgcaatttcatcttatttatttcatatttcatttc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33385765 |
aaaccggaattacagcgtcagatgaaggcttgagcaaaggttgcaatttcatcttatttatttcatatttcatttc |
33385690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 36 - 306
Target Start/End: Complemental strand, 33282561 - 33282300
Alignment:
| Q |
36 |
ttttgttatgaagggaggtttatttaactttgaatcttctatggataaatgtaactgaagaaaagaataaagatccctctcctgaaagtcctccaactga |
135 |
Q |
| |
|
||||||||||||||||| || ||||||| ||||||| ||||| || | ||||||| |||||||| || ||| ||||||||||||||||||| || |||| |
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| T |
33282561 |
ttttgttatgaagggagtttcatttaaccttgaatcctctattgacagatgtaacagaagaaaattatcaagttccctctcctgaaagtcctgcacctga |
33282462 |
T |
|
| Q |
136 |
agaagtgccagaacaaacaccagtagcagtacaatttgaaggtgaagaagttgcaattgcattaaaaaacaaacaacagcgtatctaactctaatggaca |
235 |
Q |
| |
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|||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||| ||| | || ||||||||||||||| |||| |
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| T |
33282461 |
agaagtgccagaacaaacaccagtagcaacac------aagttgaagaagttgcaattgcattaaaaaa-aaaga--agtgtatctaactctaatagaca |
33282371 |
T |
|
| Q |
236 |
aaccggaattacagcgtcagatgaaggcttgagcaaaggttgcaatttcatcttatttatttcatatttca |
306 |
Q |
| |
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||| || |||||| | | |||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
33282370 |
aactggcattacaactttagatgaaggcctgagcaaaggttgcaatttcatcttatttgcttcatatttca |
33282300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 36 - 204
Target Start/End: Complemental strand, 33260266 - 33260104
Alignment:
| Q |
36 |
ttttgttatgaagggaggtttatttaactttgaatcttctatggataaatgtaactgaagaaaagaataaagatccctctcctgaaagtcctccaactga |
135 |
Q |
| |
|
||||||||||||||||| || ||||||| ||||||| ||||| || | ||||||| |||||||| || ||| ||||||||||||||| ||| |||| || |
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|
| T |
33260266 |
ttttgttatgaagggagtttcatttaaccttgaatcctctattgacagatgtaacagaagaaaacgatcaagttccctctcctgaaagccctgcaaccga |
33260167 |
T |
|
| Q |
136 |
agaagtgccagaacaaacaccagtagcagtacaatttgaaggtgaagaagttgcaattgcattaaaaaa |
204 |
Q |
| |
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||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||| |
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| T |
33260166 |
agaagtgccagaacaaacaccagtagcagcac------aagttgaagaagttgcaattgcattaaaaaa |
33260104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 59 - 293
Target Start/End: Original strand, 31564219 - 31564454
Alignment:
| Q |
59 |
ttaactttgaatcttctatggataaatgtaactgaagaaaagaataaagatccctctcctgaaagtcctccaactgaagaag---tgccagaacaaacac |
155 |
Q |
| |
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||||||||||||| | |||| | | ||||||| |||||||| || ||| |||||||||||| |||||| | |||||||||| ||| ||| || |||| |
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| T |
31564219 |
ttaactttgaatcatgtatg-acagatgtaacagaagaaaacgattaaggtccctctcctgagagtcctgccactgaagaagaagtgcaagagcagacac |
31564317 |
T |
|
| Q |
156 |
cagtagcagtacaatttgaaggtgaagaagttgcaattgcattaaaaaacaaacaacagcgtatctaactctaatggacaaaccggaattacagcgtcag |
255 |
Q |
| |
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| || | ||||||| |||||| ||||||||||||||||||| | | |||||||||| | ||||||| ||||||||||||||||| ||||| | |||| |
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| T |
31564318 |
ctgtggtagtacaagttgaagatgaagaagttgcaattgca-tccgagacaaacaacaacttatctaattctaatggacaaaccggcattacttcttcag |
31564416 |
T |
|
| Q |
256 |
atgaaggcttgagcaaaggttgcaatttcatcttattt |
293 |
Q |
| |
|
| |||||| ||| || |||| |||||||||||||||| |
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|
| T |
31564417 |
acaaaggctcgagtaatggtttcaatttcatcttattt |
31564454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 87 - 197
Target Start/End: Complemental strand, 33416671 - 33416561
Alignment:
| Q |
87 |
taactgaagaaaagaataaagatccctctcctgaaagtcctccaactgaagaagtgccagaacaaacaccagtagcagtacaatttgaaggtgaagaagt |
186 |
Q |
| |
|
||||||||||||| ||| ||| ||||||||||||||||||| | |||||||| |||| |||||||||||| ||| ||| |||| |||||| ||||| || |
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| T |
33416671 |
taactgaagaaaacaatcaagttccctctcctgaaagtcctgccactgaagaggtgcaagaacaaacacctgtatcagcacaagttgaagatgaagcggt |
33416572 |
T |
|
| Q |
187 |
tgcaattgcat |
197 |
Q |
| |
|
||||||||||| |
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|
| T |
33416571 |
tgcaattgcat |
33416561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 303
Target Start/End: Complemental strand, 33260069 - 33259985
Alignment:
| Q |
219 |
tctaactctaatggacaaaccggaattacagcgtcagatgaaggcttgagcaaaggttgcaatttcatcttatttatttcatatt |
303 |
Q |
| |
|
||||||||||| ||||||| || |||||| | | |||||||| | ||||||||||||||||||||||||||||| |||||||| |
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| T |
33260069 |
tctaactctaacagacaaactggcattacaactttagatgaagtcctgagcaaaggttgcaatttcatcttatttgcttcatatt |
33259985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 306
Target Start/End: Complemental strand, 33416534 - 33416480
Alignment:
| Q |
252 |
tcagatgaaggcttgagcaaaggttgcaatttcatcttatttatttcatatttca |
306 |
Q |
| |
|
||||||||||||| ||| ||||||| | |||||||||||||| ||||||||||| |
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|
| T |
33416534 |
tcagatgaaggctcgagtaaaggtttccatttcatcttatttgcttcatatttca |
33416480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 303
Target Start/End: Complemental strand, 33355500 - 33355463
Alignment:
| Q |
266 |
gagcaaaggttgcaatttcatcttatttatttcatatt |
303 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |
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|
| T |
33355500 |
gagcaaaggttgcaatttcatcttatttgcttcatatt |
33355463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 54 - 306
Target Start/End: Original strand, 17443262 - 17443513
Alignment:
| Q |
54 |
tttatttaactttgaatcttctatggataaatgtaactgaagaaaagaataaagatccctctcctgaaagtcctccaactgaagaagtgccagaacaaac |
153 |
Q |
| |
|
|||||||||||||||||| |||||| | | ||||||| |||||||| ||| ||| || |||||||||||||||| |||| ||||||||||||||||||| |
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|
| T |
17443262 |
tttatttaactttgaatcctctatgaacagatgtaacagaagaaaacaatgaagttctctctcctgaaagtcctgcaaccaaagaagtgccagaacaaac |
17443361 |
T |
|
| Q |
154 |
accagtagcagtacaatttgaaggtgaagaagttgcaattgcattaaaaaacaaacaacagcgtatctaactctaatggacaaaccggaattacagcgtc |
253 |
Q |
| |
|
||||| ||| | |||| ||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| | |||||||| || |
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|
| T |
17443362 |
accagcagcggcacaagttgaacgtgaagaagttgcaattgcatt-tgaaacaaacaatggcgtatctaactctaatggacaaaccagcattacagcttc |
17443460 |
T |
|
| Q |
254 |
agatgaaggcttgagcaaaggttgcaatttcatcttatttatttcatatttca |
306 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
17443461 |
agatgaaggcttgaccaaaggttgcaatttcatcttatttgcttcaaatttca |
17443513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 129; Significance: 9e-67; HSPs: 2)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 36 - 306
Target Start/End: Original strand, 11691 - 11952
Alignment:
| Q |
36 |
ttttgttatgaagggaggtttatttaactttgaatcttctatggataaatgtaactgaagaaaagaataaagatccctctcctgaaagtcctccaactga |
135 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||| || | ||||||| |||||||| || ||| ||||||||||||||||||| || |||| |
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|
| T |
11691 |
ttttgttatgaagggagttttatttaactttgaatcctctatcgacagatgtaacagaagaaaattatcaagttccctctcctgaaagtcctgcacctga |
11790 |
T |
|
| Q |
136 |
agaagtgccagaacaaacaccagtagcagtacaatttgaaggtgaagaagttgcaattgcattaaaaaacaaacaacagcgtatctaactctaatggaca |
235 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||| ||| | || ||||||||||||||| |||| |
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|
| T |
11791 |
agaagtgccagaacaaacaccagtagcagcac------aagttgaagaagttgcaattgcattaaaaaa-aaaga--agtgtatctaactctaatagaca |
11881 |
T |
|
| Q |
236 |
aaccggaattacagcgtcagatgaaggcttgagcaaaggttgcaatttcatcttatttatttcatatttca |
306 |
Q |
| |
|
||| || |||||| | | |||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11882 |
aactggcattacaactttagatgaaggcctgagcaaaggttgcaatttcatcttatttgcttcatatttca |
11952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 36 - 306
Target Start/End: Complemental strand, 4332 - 4071
Alignment:
| Q |
36 |
ttttgttatgaagggaggtttatttaactttgaatcttctatggataaatgtaactgaagaaaagaataaagatccctctcctgaaagtcctccaactga |
135 |
Q |
| |
|
||||||||||||||||| || ||||||| ||||||| ||||| || | ||||||| |||||||| || ||| |||| |||||||||||||| || |||| |
|
|
| T |
4332 |
ttttgttatgaagggagtttcatttaaccttgaatcctctattgacagatgtaacagaagaaaacgatcaagttcccactcctgaaagtcctgcacctga |
4233 |
T |
|
| Q |
136 |
agaagtgccagaacaaacaccagtagcagtacaatttgaaggtgaagaagttgcaattgcattaaaaaacaaacaacagcgtatctaactctaatggaca |
235 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||| ||| | || ||||||||||||||| |||| |
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|
| T |
4232 |
agaagtgccagaacaaacaccagtagcatcac------aagttgaagaagttgcaattgcattaaaaaa-aaaga--agtgtatctaactctaatagaca |
4142 |
T |
|
| Q |
236 |
aaccggaattacagcgtcagatgaaggcttgagcaaaggttgcaatttcatcttatttatttcatatttca |
306 |
Q |
| |
|
||| || |||||| | | |||||||||| |||||||||||| |||||||||||||||| ||| ||||||| |
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|
| T |
4141 |
aactggcattacaactttagatgaaggcctgagcaaaggttacaatttcatcttattttcttcgtatttca |
4071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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