View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_low_49 (Length: 303)
Name: NF3090_low_49
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 20 - 287
Target Start/End: Complemental strand, 6609869 - 6609602
Alignment:
| Q |
20 |
ttctacattagaacttgtccaaacctgaacagaattgttaaaaataatatcttgtcagctatagctaatgactcaaggattgctgcttctctcttgcgcc |
119 |
Q |
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| T |
6609869 |
ttctacattagaacttgtccaaacctgaacagaattgttaaaaataatatcttgtcagctatagctaatgactcaaggattgctgcttctctcttgcgcc |
6609770 |
T |
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| Q |
120 |
ttcatttccatgattgttttgtcaatgtaattaagtctcttcatttccatgattgtttacactgtcaattaatataccgttagatcgttaaaattattct |
219 |
Q |
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| T |
6609769 |
ttcatttccatgattgttttgtcaatgtaattaagtctcttcatttccattattttttacactgtcaattaatataccgttggatcgttaaaattattct |
6609670 |
T |
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| Q |
220 |
ttaataatattatgtgttgatttgttatttcatttttgtgttacatagggatgtgatggatctgtgct |
287 |
Q |
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| T |
6609669 |
ttaataatattatgtgttgatttgttatttcatttttgtgttacatagggatgtgaaggatctgtgct |
6609602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 6602358 - 6602220
Alignment:
| Q |
16 |
caatttctacattagaacttgtccaaacctgaacagaattgttaaaaataatatcttgtcagctatagctaatgactcaaggattgctgcttctctcttg |
115 |
Q |
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||||||||| | |||||||||||||| ||||||| |||||||||| | |||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
6602358 |
caatttctataacagaacttgtccaaatctgaacaaaattgttaaagacaatatcttgtcagctatagctaatgattctaggattgctgcttctctcttg |
6602259 |
T |
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| Q |
116 |
cgccttcatttccatgattgttttgtcaatgtaattaag |
154 |
Q |
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| T |
6602258 |
cgccttcatttccatgattgttttgttaatgtaattaag |
6602220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 244 - 287
Target Start/End: Complemental strand, 6602143 - 6602100
Alignment:
| Q |
244 |
ttatttcatttttgtgttacatagggatgtgatggatctgtgct |
287 |
Q |
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| T |
6602143 |
ttatttcatttttgtgttacatagggatgtgatggatctgtgct |
6602100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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