View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_low_5 (Length: 617)
Name: NF3090_low_5
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_low_5 |
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| [»] scaffold0768 (2 HSPs) |
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| [»] scaffold1847 (1 HSPs) |
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Alignment Details
Target: scaffold0768 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: scaffold0768
Description:
Target: scaffold0768; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 145 - 527
Target Start/End: Complemental strand, 384 - 5
Alignment:
| Q |
145 |
tatgtttgtccttttgctgcaagtgctgagaattgattgtattatacctataaaataagttttcatccactccatagacacatagccacacattgtataa |
244 |
Q |
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| T |
384 |
tatgtttgtccttttgttgcaagtgctgagaattgattgtattatacctataaaataagttttcatccactccatagacacatagccacacattgtataa |
285 |
T |
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| Q |
245 |
cctttttcaaagcaacatcttaccaccttttttctctcaataataaatcttcctcctttagatataacttaaccttgccatgatcaagttacagaacaat |
344 |
Q |
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| T |
284 |
cctttttcaaagcaacatcttaccaccctttttctctcaataatatatcttcctcctttatatataacttaaccttgccatgatcaagttacagaacaat |
185 |
T |
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| Q |
345 |
atggtaacaaattgttagaaacttgttcacctttatcaataatagtatcaaagcctaattcaccaaaaacttttcttaagaaacaaaaataacacaagtc |
444 |
Q |
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| T |
184 |
atggtaacaaattgttagaaacttgttcacctttatc---aatagtatcaaagcctaattcattaacaacttttcttaagaaacaatcttaacacacgtc |
88 |
T |
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| Q |
445 |
ttaggattttatccacctttgcacctaatatctcatgcaaaaatctttattcgcattttatgatcagagcactttcaccggcg |
527 |
Q |
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| T |
87 |
ttaggattttatccacctttgcacctaatatctcatgcaaaaatctttatttgcattttatgatcagagcactttcaccggcg |
5 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0768; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 597 - 460
Alignment:
| Q |
1 |
ccaatgacaaaatttgtttaaatgtgacaaaaacatcgttttatgtgctttatnnnnnnnnt-ataatacttttgttttattcattttcattgtatctat |
99 |
Q |
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| T |
597 |
ccaatgacaaaatttgttaaaatgtgacaaaaacattgttttgtgtgctttataaaaaaaattataatacttttgtttcattcattttcattgtatctat |
498 |
T |
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| Q |
100 |
tgcaacacaaaaaataaaatcgaaataaagaaagttca |
137 |
Q |
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| T |
497 |
tgcaacacacaaaaaaaattcgaaataaagaaagttca |
460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1847 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold1847
Description:
Target: scaffold1847; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 563 - 600
Target Start/End: Complemental strand, 1301 - 1264
Alignment:
| Q |
563 |
catgctagatattaccccaatagcggatgtcatggttg |
600 |
Q |
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| T |
1301 |
catgctagatattaccccaatagcggatgtcatggttg |
1264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 239 - 310
Target Start/End: Original strand, 6845795 - 6845868
Alignment:
| Q |
239 |
gtataacctttttc-aaagcaacatcttaccacctttt-ttctctcaataataaatcttcctcctttagatata |
310 |
Q |
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| T |
6845795 |
gtataaccttcttccaaaccaacaccttaccacatttttttctctcaataataaatcttcctcctttatatata |
6845868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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