View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_low_53 (Length: 292)
Name: NF3090_low_53
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 46736740 - 46736481
Alignment:
| Q |
18 |
ccataaacgacaatgacttacttaatgtacataataatactcattaaaaattgagtatgactattatgggccacgagcaggtttaaaacaaaaacaaaat |
117 |
Q |
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| T |
46736740 |
ccatagacgacaatgacttacttaatgtacataattatactcattaaaaattgagtatgattattatgggccacgagcaggtttaaaacaaaaacaaaat |
46736641 |
T |
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| Q |
118 |
ggagtctggtcttctcttatcattccgcctcctttgcttgtatcaatttcttccaacattgtcaccacatctttcatttccggacgcttttctggattct |
217 |
Q |
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| T |
46736640 |
ggagtctggtcttctcttatcattccgcctcctttgcttgtatcaattttttccaacattgtcaccacatctttcatttccggacgcttttctggattct |
46736541 |
T |
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| Q |
218 |
tgtcccagcatcttttcattatacctgctaatgcacttggacagcatctaggaatctctg |
277 |
Q |
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| T |
46736540 |
tgtcccagcatcttttcattatatctgctaatgcacttggacagcatctaggaatctctg |
46736481 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 986262 - 986195
Alignment:
| Q |
136 |
atcattccgcctcctttgcttgtatcaatttcttccaacattgtcaccacatctttcatttccggacg |
203 |
Q |
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| T |
986262 |
atcattccaccacctttgcttgtatccagtgcttctagcattatcaccacatccttcatttccggacg |
986195 |
T |
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