View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_low_58 (Length: 264)
Name: NF3090_low_58
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_low_58 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 21 - 199
Target Start/End: Complemental strand, 40882998 - 40882819
Alignment:
| Q |
21 |
cactctttaacttgcttttaacttcttctatttgacagattgtgttttgtacttttgtttggatgcatgaaccataattaaatgaagatttagtagaaat |
120 |
Q |
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| T |
40882998 |
cactctttaacttgcttttaacttcttctatttgacagattgtgttttgtacttttgtttggatgcatgaaccataattaaatgaagatttagtagaaat |
40882899 |
T |
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| Q |
121 |
ttagcatagtcgtagtgaaaaagatgtgttggaagatataaggtcagaga-tatatagttcatcgcatagagattgtaag |
199 |
Q |
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| T |
40882898 |
ttagcatagtcgtagtgaaaaagatgtgttggaagatataaggtcagagattaaatagttcatcgcatagagattgtaag |
40882819 |
T |
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Target: chr6 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 8909001 - 8909182
Alignment:
| Q |
18 |
aaacactctttaacttgcttttaacttcttctatttgacagattgtgttttgtacttttgtttggatgcatgaaccataattaaatgaagatttagtaga |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||| |
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| T |
8909001 |
aaacactctttaacttgcttttaacttcttctatttgacagattgtgttttgtacttttgtttcgatgctttaaccataattaaatgaagatttagtaga |
8909100 |
T |
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| Q |
118 |
aatttagcatagtcgtagtgaaaaagatgtgttggaagatataaggtcagaga-tatatagttcatcgcatagagattgtaa |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
8909101 |
aatttagcatagtcgtagtgaaaaagatgtgttggaagatataaggtcagagattatatagttcatcacatagagattgtaa |
8909182 |
T |
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