View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3090_low_59 (Length: 259)
Name: NF3090_low_59
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_low_59 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 47373233 - 47373457
Alignment:
| Q |
18 |
cttagtagctgctaaaacttgagaacaaggttgtctttgctccattgttcccattgaagacaacaatatgtcgttttctacagtgtcagtaccactctcg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
47373233 |
cttagtagctgctaaaacttgagaacaaggttgtctttgctccattgttcccattgaagacaacaataagtcgttttctacaatgtcagtaccactctcg |
47373332 |
T |
|
| Q |
118 |
ttgccaagattttctgtgcacaattcaagactctttggattcagaaccaatgaggaacacttctgttgagggggaagataggtggctgttgtggtttcnn |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
47373333 |
ttgccaagattttctgtgcacaattcaagactctttggactcagaaccaaagaggaacacttctgctgagggggaagataggtggctgttgtggtttctt |
47373432 |
T |
|
| Q |
218 |
nnnnngatgtgttttgagctatatt |
242 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
47373433 |
tttttgatgtgttttgagctatatt |
47373457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 57 - 215
Target Start/End: Complemental strand, 47385657 - 47385499
Alignment:
| Q |
57 |
ctccattgttcccattgaagacaacaatatgtcgttttctacagtgtcagtaccactctcgttgccaagattttctgtgcacaattcaagactctttgga |
156 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||| ||||||||| ||||||| ||||| || || |||||||| || || || |||||||| ||||||||| |
|
|
| T |
47385657 |
ctccattgctcccattgaagacaacaacatgtcattttctacaatgtcagtgccactttcattaccaagattctccgtacataattcaaggctctttgga |
47385558 |
T |
|
| Q |
157 |
ttcagaaccaatgaggaacacttctgttgagggggaagataggtggctgttgtggtttc |
215 |
Q |
| |
|
||| | |||| ||||||| ||||||||||| | | |||||||| |||||||||||| |
|
|
| T |
47385557 |
ctcatagccaaagaggaacgtttctgttgaggatgcacataggtggttgttgtggtttc |
47385499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University