View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_low_6 (Length: 614)
Name: NF3090_low_6
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 178 - 596
Target Start/End: Complemental strand, 48888367 - 48887949
Alignment:
| Q |
178 |
ggtgattaagctctcaagaatgttaaaccagtacagaatcgatttcacattgcaatcttatatacaattctggccaaaagaaaaaagacgaaatttttat |
277 |
Q |
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| T |
48888367 |
ggtgattaagctctcaacaatgttaaaccagtacagaatcgatttcacattgcaatcttatatacaattctggccaaaagaaaaaagacgaaatttttat |
48888268 |
T |
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| Q |
278 |
caatgtcaacataataaaacagtaacattcaaacacaacctggagttcacctgtttactgtcaggactccaactaactgcatatatgctgcccttgtgac |
377 |
Q |
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| T |
48888267 |
caatgtcaacataataaaacagtaacattcaaacacaacctggagttcacctgtttactgtcacgactccaactaactgcatatatgctgcccttgtgac |
48888168 |
T |
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| Q |
378 |
cgtcctcttcagaaaactctccaagtttactcccagtctttccatcatatataatacccttcctatctgagctaactgtaacgaatttgctcccatctgg |
477 |
Q |
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| T |
48888167 |
cgtcctcttcagaaaactctccaagtttactcccagtctttccatcatatataatacccttcctatctgagctaactgtaacgaatttgctcccatctgg |
48888068 |
T |
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| Q |
478 |
agaatatctaacacagttgacaaaattcgtatggtccctgcagatatagaatgtcttctatgacaacctgaataaggaaatagaaacctactcaacccaa |
577 |
Q |
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| T |
48888067 |
agaatatctaacacagttgacaaaattcgtatggtccctgcagatatagaatgtcttctatgacaacctgaataaggaaatagaaacctactcaacccaa |
48887968 |
T |
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| Q |
578 |
aatacttatttcaagctag |
596 |
Q |
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| T |
48887967 |
aatacttatttcaagctag |
48887949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 8 - 119
Target Start/End: Complemental strand, 48888537 - 48888425
Alignment:
| Q |
8 |
cagcagagacagtaagaacctgtaannnnnnn-acttaatttaaactagaatgtaaatagcagcactgaacatctaaaatagcacaaataaattcataac |
106 |
Q |
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| T |
48888537 |
cagcagagacagtaagaacctgtaattttttttacttaatttaaactagaatgtaaatagcagtactgaacatctaaaatagcacaaataaattcataac |
48888438 |
T |
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| Q |
107 |
atgttcctcctta |
119 |
Q |
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| T |
48888437 |
atgttcctcctta |
48888425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 410 - 504
Target Start/End: Original strand, 45097868 - 45097962
Alignment:
| Q |
410 |
ccagtctttccatcatatataatacccttcctatctgagctaactgtaacgaatttgctcccatctggagaatatctaacacagttgacaaaatt |
504 |
Q |
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| T |
45097868 |
ccagtctttccatcgaatatgataccctttttgtcagaactaacagttacaaatttactgccatctggagaatatcttacacaattgacaaaatt |
45097962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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