View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_low_64 (Length: 251)
Name: NF3090_low_64
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_low_64 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 39394574 - 39394353
Alignment:
| Q |
19 |
caatgtatcaaacaaattggcttctgattcttttcttttttccaattctgcctctgattcttgaagtttcctcttgtactcagacaacaaatcatctttc |
118 |
Q |
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| T |
39394574 |
caatgtatcaaacaaattggcttctgattcttttcttttttccaattctgcctctgattcttgaagtttcctcttgtactcagacaacaaaacatctttc |
39394475 |
T |
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| Q |
119 |
tccgacaattgttgttcatgttttaatgatatttcactatggttgttttttggttctgaaaccttctttgcggcaattacttcatcaatcatgtcattgg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39394474 |
tccgacaattgttgttcatgttttaatgatatttcactatggttgttttttggttctgaaaccttctttgcggcaattacttcatcaatcatgtcattgg |
39394375 |
T |
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| Q |
219 |
ttttctctgctacctttttcat |
240 |
Q |
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||||||| |||||||||||||| |
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| T |
39394374 |
ttttctcagctacctttttcat |
39394353 |
T |
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