View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_low_66 (Length: 246)
Name: NF3090_low_66
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_low_66 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 31607719 - 31607947
Alignment:
| Q |
18 |
gattttgtagaatattttcggaagactagctagttatattaatttgtgcacgagggtgttgagtatatgttacactatatattagtatttcaatattaat |
117 |
Q |
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| T |
31607719 |
gattttgtagaatatttttggaagactagctagttatattaatttgtgcacgagggtgttgagtatatgttacactatatattagtatttcaatattaat |
31607818 |
T |
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| Q |
118 |
aattaatttaannnnnnnnnctatgatcctgtccaaccaccttcacccatttctacccaccaaaaaaccctttcatgcttagtctaatgagaacatgaac |
217 |
Q |
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| T |
31607819 |
aattaatttaatttttttttctatgatcctgtccaaccaccttcacccatttctacccaccaaaaaaccctttcatgcttagtctaatgagaacatgaac |
31607918 |
T |
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| Q |
218 |
ctattgtaacaatattctcataaatatat |
246 |
Q |
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| T |
31607919 |
ctattgtaacaatattctcataaatatat |
31607947 |
T |
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