View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_low_67 (Length: 246)
Name: NF3090_low_67
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_low_67 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 11295543 - 11295806
Alignment:
| Q |
1 |
ttcacccttcggtgacataagagaattgtaaaaggtccataaaaatatttgaattctaaaattttt-gttaatagtccttgaacatatataactttgttt |
99 |
Q |
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|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
11295543 |
ttcacccttcagtgacataagagaattgtcaaaggtccataaaaatatttgaattctaaaattttttgtttttagtccttgaacatatataactttgttt |
11295642 |
T |
|
| Q |
100 |
ttggtccttgatgttttgttttagaagtccttgcaaaatttgttc------------------ataatatttattttagacttattctaagagacnnnnn |
181 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11295643 |
ttggtccttgatgttttgttttagaagtccttgcaaaatttgttcatattgaaattcgtctctataatatttattttagacttattctaagagacaaaaa |
11295742 |
T |
|
| Q |
182 |
nntcaaatcaaatagtctacacatataccagtatttcctcaagaaatcattaattcatttcact |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11295743 |
aatcaaatcaaatagtctacacatataccagtatttcctcaagaaatcattaattcatttcact |
11295806 |
T |
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