View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_low_7 (Length: 604)
Name: NF3090_low_7
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 16 - 586
Target Start/End: Complemental strand, 38973746 - 38973178
Alignment:
| Q |
16 |
aacaactgagttaatacgtctatgaaaactttaaactcagagtacatgaacatcaaactcataaaactattcatgatgttcattaaaagaaagaaagtta |
115 |
Q |
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| T |
38973746 |
aacaactgagttaatacgtctatgaaaactttaaactcagagtacatgaacatcaaactcataaaactattcatgatgttcattaaaagaaagaaagtta |
38973647 |
T |
|
| Q |
116 |
ttcatgtttgtcttctttcattgagtaacttcaattggttagttgaagttaatgagaagagtcttaactttcttctacacactttccctttctcccgtgg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38973646 |
ttcatgtttgtcttctttcattgagtaacttcaattggttagttgaagttaatgagaagagtcttaactttcttctacacactttccctttctcccgtgg |
38973547 |
T |
|
| Q |
216 |
ttgctattaattcctttagttgaccaaaaaatattttcctgtttttgcatgcaaccgtgagggggcagttaaataattcaactccgatannnnnnnnagt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
38973546 |
ttgctattaattcctttagttgaccaaaaaatattttcctgtttttgcatgcaaccgtgagggggcagttaaataattcaattccgatattttttttagt |
38973447 |
T |
|
| Q |
316 |
tcttgttgggatgtccatgacaaaatcttgtactataatctgatactgttttcccgtcatttacaatttcatataaattatagttataaattcttccaat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38973446 |
tcttgttgggatgtccatgacaaaatcttgtactataatctgatactgttttcccgtcatttacaatttcatataaattatagttataaattcttccaat |
38973347 |
T |
|
| Q |
416 |
caatactcccttctttctctctttgttcctatcatacacagtactatatgnnnnnnnatactacatctgttcttatttataaaactcttttgcaaaaatt |
515 |
Q |
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| T |
38973346 |
caatactcccttctttctctc-ttgttcctatcatacacagtactatatg-ttttttatactacatctgttcttatttataaaactcttttgcaaaaatt |
38973249 |
T |
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| Q |
516 |
tattgtcactttttataagttcctcttcaaatttatatcaaggtgcattaactaatttttcacaaaaatac |
586 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38973248 |
tattgtcactttttataagttcctcttcaaatttatatcaaggtgcattaactaatttttcacaaaaatac |
38973178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 474 - 582
Target Start/End: Complemental strand, 30074245 - 30074141
Alignment:
| Q |
474 |
tactacatctgttcttatttataaaactcttttgcaaaaatttattgtcactttttataagttcctcttcaaatttatatcaaggtgcattaactaattt |
573 |
Q |
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||||||||| || ||||||||||| || ||||||| ||| ||| ||||| ||||||||||| ||||||||| ||||||||||||||||| |||||| |
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| T |
30074245 |
tactacatccgtccttatttataagacccttttgccaaattttgttgtccctttttataagaacctcttcaa----atatcaaggtgcattaattaattt |
30074150 |
T |
|
| Q |
574 |
ttcacaaaa |
582 |
Q |
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||||||||| |
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| T |
30074149 |
ttcacaaaa |
30074141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 473 - 533
Target Start/End: Complemental strand, 51718136 - 51718076
Alignment:
| Q |
473 |
atactacatctgttcttatttataaaactcttttgcaaaaatttattgtcactttttataa |
533 |
Q |
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||||||| || ||||||| |||||||||||||||| ||| ||| ||||| |||||||||| |
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| T |
51718136 |
atactacctccgttcttaattataaaactcttttgataaatttttttgtccctttttataa |
51718076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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