View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_low_70 (Length: 237)
Name: NF3090_low_70
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_low_70 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 5079352 - 5079140
Alignment:
| Q |
1 |
ttcaatcccatattgcatggaactgttattctctacttcattcatttcactttttctcttttcttaacaactagccaatgatttgtgatagaatatatat |
100 |
Q |
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| T |
5079352 |
ttcaatcccatattgtatggaactgttattctctacgtcattcatttcactttttctcttttcttaacaactatccaatgatttgtgatagaatatatat |
5079253 |
T |
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| Q |
101 |
ttaatatcacagcttattgttgtgttgcaattttcatagtagtgtatgctagtggtgacattaatgtggttgatatattaactatatttcttatcatgag |
200 |
Q |
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| T |
5079252 |
ttaacatcacagcttattgttgtgttgcaattttcatagtagtgtatgctagtggtgacattaatgtggttgatatattaactatatttcttatcatgag |
5079153 |
T |
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| Q |
201 |
atgttagaaaatg |
213 |
Q |
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| T |
5079152 |
atgttagaaaatg |
5079140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 219
Target Start/End: Original strand, 5900087 - 5900171
Alignment:
| Q |
130 |
attttcatagtagtgtatgctagtggtgacattaatgtggttgatatattaactatatttcttatcatgagatgttagaaaatgggaaag |
219 |
Q |
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| T |
5900087 |
attttcaaagtagtgtatgttagtggtgaca---atgttgttgatgt--taactatatttctcaccatcagatgttagaaaatgggaaag |
5900171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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