View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3090_low_71 (Length: 229)

Name: NF3090_low_71
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3090_low_71
NF3090_low_71
[»] chr2 (7 HSPs)
chr2 (19-217)||(8411576-8411774)
chr2 (19-217)||(8433674-8433872)
chr2 (90-217)||(8376232-8376359)
chr2 (90-217)||(8416731-8416858)
chr2 (104-217)||(8395918-8396031)
chr2 (104-217)||(8405541-8405654)
chr2 (104-217)||(8430812-8430925)
[»] scaffold1738 (1 HSPs)
scaffold1738 (90-217)||(64-191)
[»] chr4 (2 HSPs)
chr4 (96-217)||(55330460-55330581)
chr4 (104-217)||(55335900-55336013)


Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 8411576 - 8411774
Alignment:
Q  19 gtaatctatatttacatttgttttctatgttatgaaagaattaaagaatgtctattgtcttgaagaaataatatctcagaagagcttgctggcaaattca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8411576 gtaatctatatttacatttgttttctatgttatgaaagaattaaagaatgtctattgtcttgaagaaataatatctcagaagagcttgctggcaaattca 8411675  T
Q  119 tctatttcgataccttccatgcgacaagaagctgattttgaggtaagttccctcagctctgatacacttcttcccaactgcaaagccatcttcatttca 217  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||  |||||||||| |||| ||||    
T  8411676 tctatttcgatactttccatgcgacaagaagctgattttgaggcaagttccctcagctctgtgacacttcttcccaatcgcaaagccattttcaattca 8411774  T

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Target: chr2; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 8433674 - 8433872
Alignment:
Q  19 gtaatctatatttacatttgttttctatgttatgaaagaattaaagaatgtctattgtcttgaagaaataatatctcagaagagcttgctggcaaattca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8433674 gtaatctatatttacatttgttttctatgttatgaaagaattaaagaatgtctattgtcttgaagaaataatatctcagaagagcttgctggcaaattca 8433773  T
Q  119 tctatttcgataccttccatgcgacaagaagctgattttgaggtaagttccctcagctctgatacacttcttcccaactgcaaagccatcttcatttca 217  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||  |||||||||| |||| ||||    
T  8433774 tctatttcgatactttccatgcgacaagaagctgattttgaggcaagttccctcagctctgtgacacttcttcccaatcgcaaagccattttcaattca 8433872  T

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Target: chr2; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 90 - 217
Target Start/End: Complemental strand, 8376359 - 8376232
Alignment:
Q  90 tatctcagaagagcttgctggcaaattcatctatttcgataccttccatgcgacaagaagctgattttgaggtaagttccctcagctctgatacacttct 189  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8376359 tatctcagaatagcttgctggcaaattcatcaatttcgataccttccatgcgacaagaagctgattttgaggcaagttccctcagctctgatacacttct 8376260  T
Q  190 tcccaactgcaaagccatcttcatttca 217  Q
    |||||| ||||||||||| |||||||||    
T  8376259 tcccaattgcaaagccattttcatttca 8376232  T

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Target: chr2; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 90 - 217
Target Start/End: Original strand, 8416731 - 8416858
Alignment:
Q  90 tatctcagaagagcttgctggcaaattcatctatttcgataccttccatgcgacaagaagctgattttgaggtaagttccctcagctctgatacacttct 189  Q
    |||||||||| |||||||||| |||||||||||| || | |||||| |||||||||||||||||||||| || | |||||||||||||||||||| ||||    
T  8416731 tatctcagaatagcttgctggaaaattcatctatgtcaacaccttcgatgcgacaagaagctgattttgtggcacgttccctcagctctgatacatttct 8416830  T
Q  190 tcccaactgcaaagccatcttcatttca 217  Q
    |||||| ||||||||||| |||||||||    
T  8416831 tcccaattgcaaagccattttcatttca 8416858  T

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Target: chr2; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 104 - 217
Target Start/End: Complemental strand, 8396031 - 8395918
Alignment:
Q  104 ttgctggcaaattcatctatttcgataccttccatgcgacaagaagctgattttgaggtaagttccctcagctctgatacacttcttcccaactgcaaag 203  Q
    ||||| |||||||||||||| || | ||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||    
T  8396031 ttgcttgcaaattcatctatgtcaacaccttccatgcgataagaagctgattttgatgcaagttccctcagctctgatacacttcttcccaattgcaaag 8395932  T
Q  204 ccatcttcatttca 217  Q
    |||| |||||||||    
T  8395931 ccattttcatttca 8395918  T

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Target: chr2; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 104 - 217
Target Start/End: Original strand, 8405541 - 8405654
Alignment:
Q  104 ttgctggcaaattcatctatttcgataccttccatgcgacaagaagctgattttgaggtaagttccctcagctctgatacacttcttcccaactgcaaag 203  Q
    ||||| |||||||||||||| || | ||||||||||||| |||||||||||||||| | ||||||||||||||| ||||||||||||||||| |||||||    
T  8405541 ttgcttgcaaattcatctatgtcaacaccttccatgcgataagaagctgattttgatgcaagttccctcagctcagatacacttcttcccaattgcaaag 8405640  T
Q  204 ccatcttcatttca 217  Q
    |||| |||||||||    
T  8405641 ccattttcatttca 8405654  T

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Target: chr2; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 104 - 217
Target Start/End: Original strand, 8430812 - 8430925
Alignment:
Q  104 ttgctggcaaattcatctatttcgataccttccatgcgacaagaagctgattttgaggtaagttccctcagctctgatacacttcttcccaactgcaaag 203  Q
    ||||||| |||||||||||| || | ||||||||||||| |||||||||||||||| | ||||||||| ||||||||||||||| ||||||| |||||||    
T  8430812 ttgctggaaaattcatctatgtcaacaccttccatgcgataagaagctgattttgatgcaagttcccttagctctgatacactttttcccaattgcaaag 8430911  T
Q  204 ccatcttcatttca 217  Q
    ||||||||||||||    
T  8430912 ccatcttcatttca 8430925  T

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Target: scaffold1738 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold1738
Description:

Target: scaffold1738; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 90 - 217
Target Start/End: Complemental strand, 191 - 64
Alignment:
Q  90 tatctcagaagagcttgctggcaaattcatctatttcgataccttccatgcgacaagaagctgattttgaggtaagttccctcagctctgatacacttct 189  Q
    |||||||||| | ||||||||||||||||||||| || | |||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  191 tatctcagaataacttgctggcaaattcatctatgtcaacaccttcgatgcgacaagaagctgattttgatgcaagttccctcagctctgatacacttct 92  T
Q  190 tcccaactgcaaagccatcttcatttca 217  Q
    |||||| ||||||||||| |||||||||    
T  91 tcccaattgcaaagccattttcatttca 64  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 217
Target Start/End: Original strand, 55330460 - 55330581
Alignment:
Q  96 agaagagcttgctggcaaattcatctatttcgataccttccatgcgacaagaagctgattttgaggtaagttccctcagctctgatacacttcttcccaa 195  Q
    |||| |||||| | ||||||||||| |  || || |||| ||| ||||||||| |||||||||| | ||| || |||| ||| || ||| ||||||||||    
T  55330460 agaacagcttgttagcaaattcatcaacatcaattcctttcattcgacaagaacctgattttgaagcaagctctctcatctcagaaacatttcttcccaa 55330559  T
Q  196 ctgcaaagccatcttcatttca 217  Q
    |  ||||||||| |||||||||    
T  55330560 catcaaagccattttcatttca 55330581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 217
Target Start/End: Original strand, 55335900 - 55336013
Alignment:
Q  104 ttgctggcaaattcatctatttcgataccttccatgcgacaagaagctgattttgaggtaagttccctcagctctgatacacttcttcccaactgcaaag 203  Q
    ||||||||||||||||||||    || |||||||||| ||| | ||| |||||||| | |||||  || ||||| || ||||||||||| |||  ||| |    
T  55335900 ttgctggcaaattcatctatagaaattccttccatgcaacaggcagcagattttgaagcaagttgtcttagctcagaaacacttcttcctaacatcaatg 55335999  T
Q  204 ccatcttcatttca 217  Q
    |||| |||||||||    
T  55336000 ccattttcatttca 55336013  T

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