View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3090_low_72 (Length: 227)

Name: NF3090_low_72
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3090_low_72
NF3090_low_72
[»] scaffold0277 (1 HSPs)
scaffold0277 (34-227)||(5080-5273)
[»] chr6 (14 HSPs)
chr6 (34-155)||(28785879-28786000)
chr6 (34-221)||(27725254-27725454)
chr6 (34-111)||(27531770-27531847)
chr6 (34-155)||(26802034-26802144)
chr6 (176-225)||(26655721-26655770)
chr6 (176-225)||(26761692-26761741)
chr6 (157-221)||(27718789-27718852)
chr6 (34-68)||(27593559-27593593)
chr6 (34-68)||(27678533-27678567)
chr6 (165-224)||(27593385-27593439)
chr6 (165-224)||(27678680-27678734)
chr6 (165-224)||(27706801-27706855)
chr6 (158-220)||(27698903-27698964)
chr6 (34-68)||(27706981-27707015)
[»] scaffold0349 (3 HSPs)
scaffold0349 (34-221)||(3831-4031)
scaffold0349 (157-221)||(8211-8274)
scaffold0349 (158-220)||(14764-14825)


Alignment Details
Target: scaffold0277 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 34 - 227
Target Start/End: Complemental strand, 5273 - 5080
Alignment:
Q  34 taacaaagtgaaaaattacatgcagcagaagaatatataaaagcagttcaaaactaaaacatgttaaaagtcttgtagtacaatgatatttactgtatac 133  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5273 taacaaagtgaaaaattacatgcagcagaagaatttataaaagcagttcaaaactaaaacatgttaaaagtcttgtagtacaatgatatttactgtatac 5174  T
Q  134 atgattggtccacacggctatatgagaccatttttctcataagttataaagttacctatcaaggactttacatcacagaccacaaaaacttatt 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5173 atgattggtccacacggctatatgagaccatttttctcataagttataaagttacctatcaaggactttacatcacagaccacaaaaacttatt 5080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 1e-55; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 34 - 155
Target Start/End: Original strand, 28785879 - 28786000
Alignment:
Q  34 taacaaagtgaaaaattacatgcagcagaagaatatataaaagcagttcaaaactaaaacatgttaaaagtcttgtagtacaatgatatttactgtatac 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||    
T  28785879 taacaaagtgaaaaattacatgcagcagaagaatatataaaagcagttcaaaactaaaacatgttaaaagtcatgtagtacaatgatatttagtatatac 28785978  T
Q  134 atgattggtccacacggctata 155  Q
    ||||||||||||||||||||||    
T  28785979 atgattggtccacacggctata 28786000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 34 - 221
Target Start/End: Complemental strand, 27725454 - 27725254
Alignment:
Q  34 taacaaagtgaaaaattacatgcagcagaagaatatataaaagcagttcaaaactaaaacatgttaaaagtcttgtagtacaatgatatttactgtatac 133  Q
    ||||||||||||||||||||| |||||||||||||    |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||        
T  27725454 taacaaagtgaaaaattacattcagcagaagaata----aaagcagttcaaaactaaaacatgttaaaagtcttgtaatacaatgatatttattgt---- 27725363  T
Q  134 atgattggt-ccacacggctata--------------------tgagaccatttttctcataagttataaagttacctatcaaggactttacatcacaga 212  Q
    ||||||||| |||||||||||||                     |||||||||||||||||||||||||||||||| |||||| ||||| |||| |||||    
T  27725362 atgattggtcccacacggctataggaagtggccaggaagtttcagagaccatttttctcataagttataaagttacttatcaaagacttcacataacaga 27725263  T
Q  213 ccacaaaaa 221  Q
    |||||||||    
T  27725262 ccacaaaaa 27725254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 27531847 - 27531770
Alignment:
Q  34 taacaaagtgaaaaattacatgcagcagaagaatatataaaagcagttcaaaactaaaacatgttaaaagtcttgtag 111  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||    
T  27531847 taacaaagtgaaaatttacattcagcagaagaatatataaaagcagttgaaaactaaaacttgtaaaaagtcttgtag 27531770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 34 - 155
Target Start/End: Original strand, 26802034 - 26802144
Alignment:
Q  34 taacaaagtgaaaaattacatgcagcagaagaatatataaaagcagttcaaaactaaaacatgttaaaagtcttgtagtacaatgatatttactgtatac 133  Q
    |||||||||||||||||||||||| |||||||     |||||| |||| ||||||||| |||||||||||||||   ||||| | ||||||| |||        
T  26802034 taacaaagtgaaaaattacatgcaacagaaga----gtaaaagtagttgaaaactaaatcatgttaaaagtctt---gtacacttatatttattgt---- 26802122  T
Q  134 atgattggtccacacggctata 155  Q
    ||||||||||||||||||||||    
T  26802123 atgattggtccacacggctata 26802144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 26655721 - 26655770
Alignment:
Q  176 gttataaagttacctatcaaggactttacatcacagaccacaaaaactta 225  Q
    ||||||||||||| || ||| |||||||||||||||||||||||||||||    
T  26655721 gttataaagttacttaccaaagactttacatcacagaccacaaaaactta 26655770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 26761692 - 26761741
Alignment:
Q  176 gttataaagttacctatcaaggactttacatcacagaccacaaaaactta 225  Q
    ||||||||||||| || ||| |||||||||||||||||||||||||||||    
T  26761692 gttataaagttacttaccaaagactttacatcacagaccacaaaaactta 26761741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 27718852 - 27718789
Alignment:
Q  157 gagaccatttttctcataagttataaagttacctatcaaggactttacatcacagaccacaaaaa 221  Q
    |||||||||||||||||  ||||||||||||| |||||| ||||| |||||||||| ||||||||    
T  27718852 gagaccatttttctcatt-gttataaagttacttatcaaagacttcacatcacagaacacaaaaa 27718789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 27593593 - 27593559
Alignment:
Q  34 taacaaagtgaaaaattacatgcagcagaagaata 68  Q
    |||||||||||||||||||||||||||||||||||    
T  27593593 taacaaagtgaaaaattacatgcagcagaagaata 27593559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 27678533 - 27678567
Alignment:
Q  34 taacaaagtgaaaaattacatgcagcagaagaata 68  Q
    |||||||||||||||||||||||||||||||||||    
T  27678533 taacaaagtgaaaaattacatgcagcagaagaata 27678567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 27593439 - 27593385
Alignment:
Q  165 ttttctcataagttataaagttacctatcaaggactttacatcacagaccacaaaaactt 224  Q
    |||||||||||||||||||||||| |||||| ||||     |||||||||||||||||||    
T  27593439 ttttctcataagttataaagttacttatcaaagact-----tcacagaccacaaaaactt 27593385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 27678680 - 27678734
Alignment:
Q  165 ttttctcataagttataaagttacctatcaaggactttacatcacagaccacaaaaactt 224  Q
    |||||||||||||||||||||||| |||||| ||||     |||||||||||||||||||    
T  27678680 ttttctcataagttataaagttacttatcaaagact-----tcacagaccacaaaaactt 27678734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 27706855 - 27706801
Alignment:
Q  165 ttttctcataagttataaagttacctatcaaggactttacatcacagaccacaaaaactt 224  Q
    |||||||||||||||||||||||| |||||| ||||     |||||||||||||||||||    
T  27706855 ttttctcataagttataaagttacttatcaaagact-----tcacagaccacaaaaactt 27706801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 220
Target Start/End: Complemental strand, 27698964 - 27698903
Alignment:
Q  158 agaccatttttctcataagttataaagttacctatcaaggactttacatcacagaccacaaaa 220  Q
    |||||||||||||| |  ||||||||||||| |||||| ||||| |||||||||| |||||||    
T  27698964 agaccatttttctcctt-gttataaagttacttatcaaagacttcacatcacagaacacaaaa 27698903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 27707015 - 27706981
Alignment:
Q  34 taacaaagtgaaaaattacatgcagcagaagaata 68  Q
    |||||||||||||||||| ||||||||||||||||    
T  27707015 taacaaagtgaaaaattaaatgcagcagaagaata 27706981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 34 - 221
Target Start/End: Complemental strand, 4031 - 3831
Alignment:
Q  34 taacaaagtgaaaaattacatgcagcagaagaatatataaaagcagttcaaaactaaaacatgttaaaagtcttgtagtacaatgatatttactgtatac 133  Q
    ||||||||||||||||||||| |||||||||||||    |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||        
T  4031 taacaaagtgaaaaattacattcagcagaagaata----aaagcagttcaaaactaaaacatgttaaaagtcttgtaatacaatgatatttattgt---- 3940  T
Q  134 atgattggt-ccacacggctata--------------------tgagaccatttttctcataagttataaagttacctatcaaggactttacatcacaga 212  Q
    ||||||||| |||||||||||||                     |||||||||||||||||||||||||||||||| |||||| ||||| |||| |||||    
T  3939 atgattggtcccacacggctataggaagtggccaggaagtttcagagaccatttttctcataagttataaagttacttatcaaagacttcacataacaga 3840  T
Q  213 ccacaaaaa 221  Q
    |||||||||    
T  3839 ccacaaaaa 3831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 8274 - 8211
Alignment:
Q  157 gagaccatttttctcataagttataaagttacctatcaaggactttacatcacagaccacaaaaa 221  Q
    |||||||||||||||||  ||||||||||||| |||||| ||||| |||||||||| ||||||||    
T  8274 gagaccatttttctcatt-gttataaagttacttatcaaagacttcacatcacagaacacaaaaa 8211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 220
Target Start/End: Complemental strand, 14825 - 14764
Alignment:
Q  158 agaccatttttctcataagttataaagttacctatcaaggactttacatcacagaccacaaaa 220  Q
    |||||||||||||| |  ||||||||||||| |||||| ||||| |||||||||| |||||||    
T  14825 agaccatttttctcctt-gttataaagttacttatcaaagacttcacatcacagaacacaaaa 14764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University