View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_low_73 (Length: 226)
Name: NF3090_low_73
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_low_73 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 23850244 - 23850462
Alignment:
| Q |
8 |
atcatcagcatcacaatgattcggcaatggtgcaccacaaagaaacttgtttccagcatatattgatggataaatattaagtgtaaaaaattggtttcct |
107 |
Q |
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| T |
23850244 |
atcatcagcatcacaatgattcggcaatggtgcaccacaaagaaacttgtttccagcatatattgatggataaatattaagtgtaaaaaattggtttcct |
23850343 |
T |
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| Q |
108 |
tgtggaactggtcctgaaagattgttgtaggacaagtctaggtgagttagaaaagttaaactagacatggtgtttggaattgagcttgaaagttgatcat |
207 |
Q |
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| T |
23850344 |
tgtggaactggtcctgaaagattgttgtaggacaagtctaggtgagttagaaaagttaaactagacatggtgtttggaattgagcttgaaagttgatcat |
23850443 |
T |
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| Q |
208 |
gagagaaatccaaagattc |
226 |
Q |
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| T |
23850444 |
gagagaaatccaaagattc |
23850462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 23749544 - 23749761
Alignment:
| Q |
9 |
tcatcagcatcacaatgattcggcaatggtgcaccacaaagaaacttgtttccagcatatattgatggataaatattaagtgtaaaaaattggtttcctt |
108 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||| ||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
23749544 |
tcatcagcatcacaatgattagacaatggtgcaccacaaagaaatttgtttccatcatatatcgatggatcaatattaagtgtaaaaaattggtttcctt |
23749643 |
T |
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| Q |
109 |
gtggaactggtcctgaaagattgttgtaggacaagtctaggtgagttagaaaagttaaactagacatggtgtttggaattgagcttgaaagttgatcatg |
208 |
Q |
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| T |
23749644 |
gtggaactggtcctgaaagattgttgtaggacaagtttaggtgagctagaaaagttaaactagacatggtgtttggaatcgagcttgaaagttgatcatg |
23749743 |
T |
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| Q |
209 |
agagaaatccaaagattc |
226 |
Q |
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| T |
23749744 |
agagaaatccaaagattc |
23749761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 32 - 226
Target Start/End: Original strand, 22616963 - 22617154
Alignment:
| Q |
32 |
caatggtgcaccacaaagaaacttgtttccagcatatattgatggataaatattaagtgtaaaaaattggtttccttgtggaactggtcctgaaagattg |
131 |
Q |
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| T |
22616963 |
caatggtgcaccgcaaagatatttgttgccaacataaatagatggatca---ttaaatgttaaaaactggtttccttgtggaattggtcctgaaaggttg |
22617059 |
T |
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| Q |
132 |
ttgtaggacaagtctaggtgagttagaaaagttaaactagacatggtgtttggaattgagcttgaaagttgatcatgagagaaatccaaagattc |
226 |
Q |
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| T |
22617060 |
ttgtaggacaagtttagtacagatagaaatgttaaactagacatggtgtgtggaattgagcctgaaagttgaccctgagagaggtccaacgattc |
22617154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 8 - 203
Target Start/End: Complemental strand, 20574410 - 20574218
Alignment:
| Q |
8 |
atcatcagcatcacaatgattcggcaatggtgcaccacaaagaaacttgtttccagcatatattgatggataaatattaagtgtaaaaaattggtttcct |
107 |
Q |
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||||||| ||| |||||||||| || |||||||||||||||| | ||||| ||| |||| || ||||||| | |||||||| || || ||||||||| |
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| T |
20574410 |
atcatcaacatggcaatgattcgacagtggtgcaccacaaagatatttgttgccaacataaatagatggatca---ttaagtgttaagaactggtttcct |
20574314 |
T |
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| Q |
108 |
tgtggaactggtcctgaaagattgttgtaggacaagtctaggtgagttagaaaagttaaactagacatggtgtttggaattgagcttgaaagttga |
203 |
Q |
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||||||| ||||||||||| |||||||||||||||| ||| || ||||||||||||| |||||||||||| |||||||| || |||||||||| |
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| T |
20574313 |
tgtggaatcggtcctgaaaggttgttgtaggacaagtttagtacagatagaaaagttaaattagacatggtgtatggaattgggcctgaaagttga |
20574218 |
T |
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