View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3090_low_76 (Length: 218)

Name: NF3090_low_76
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3090_low_76
NF3090_low_76
[»] chr7 (7 HSPs)
chr7 (1-218)||(42344557-42344774)
chr7 (99-176)||(45557408-45557485)
chr7 (99-197)||(40491600-40491698)
chr7 (99-216)||(38123631-38123748)
chr7 (113-186)||(45997720-45997794)
chr7 (106-175)||(17111889-17111958)
chr7 (98-182)||(41788353-41788437)
[»] chr1 (6 HSPs)
chr1 (113-216)||(28083867-28083970)
chr1 (113-218)||(1514344-1514449)
chr1 (106-198)||(7524134-7524226)
chr1 (108-216)||(30557507-30557613)
chr1 (124-216)||(11049253-11049345)
chr1 (105-180)||(47411676-47411751)
[»] chr8 (12 HSPs)
chr8 (109-216)||(13384623-13384736)
chr8 (99-198)||(35495011-35495110)
chr8 (107-216)||(32927895-32928004)
chr8 (99-215)||(26100111-26100227)
chr8 (120-216)||(38868501-38868597)
chr8 (99-144)||(10368040-10368085)
chr8 (125-216)||(15677806-15677898)
chr8 (112-218)||(4662881-4662987)
chr8 (125-183)||(7601942-7601999)
chr8 (99-212)||(16972029-16972142)
chr8 (106-158)||(9048006-9048058)
chr8 (99-182)||(33184174-33184258)
[»] chr4 (8 HSPs)
chr4 (107-216)||(39386636-39386745)
chr4 (116-216)||(32818352-32818452)
chr4 (108-198)||(21691186-21691276)
chr4 (106-186)||(35065096-35065176)
chr4 (106-216)||(8604594-8604704)
chr4 (106-199)||(1616410-1616503)
chr4 (155-216)||(30357515-30357576)
chr4 (106-151)||(33843779-33843824)
[»] chr5 (5 HSPs)
chr5 (111-216)||(38845446-38845552)
chr5 (107-184)||(42858143-42858220)
chr5 (106-216)||(39097249-39097359)
chr5 (106-198)||(6951277-6951369)
chr5 (108-196)||(15368496-15368584)
[»] chr2 (9 HSPs)
chr2 (107-184)||(13912822-13912899)
chr2 (107-212)||(33019129-33019234)
chr2 (106-209)||(44439264-44439367)
chr2 (106-216)||(42740980-42741089)
chr2 (106-170)||(16518827-16518891)
chr2 (107-199)||(32596011-32596103)
chr2 (106-186)||(33502270-33502347)
chr2 (165-206)||(41494102-41494143)
chr2 (107-199)||(22536018-22536110)
[»] chr6 (8 HSPs)
chr6 (106-212)||(434209-434315)
chr6 (111-196)||(17225875-17225960)
chr6 (107-184)||(25195339-25195416)
chr6 (107-198)||(3482067-3482158)
chr6 (98-184)||(5724594-5724680)
chr6 (99-193)||(34620912-34621006)
chr6 (99-193)||(34748349-34748443)
chr6 (121-186)||(34027404-34027469)
[»] chr3 (6 HSPs)
chr3 (99-198)||(32523299-32523404)
chr3 (142-199)||(44771714-44771771)
chr3 (106-217)||(27266766-27266877)
chr3 (103-198)||(31013039-31013134)
chr3 (99-136)||(1114921-1114958)
chr3 (111-215)||(52364055-52364159)
[»] scaffold0361 (1 HSPs)
scaffold0361 (99-186)||(14079-14166)


Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 42344557 - 42344774
Alignment:
Q  1 ttgacctagttagtaatttagtttgtgcataaatggttctgcagtgataaactgattgagtgaattgattttgtaaattgattctgattttaagcttatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  42344557 ttgacctagttagtaatttagtttgtgcataaatggttctggagtgataaactgatcgagtgaattgattttgtaaattgattctgattttaagtttatt 42344656  T
Q  101 gaagataaagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaatcagatgctacaaattt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  42344657 gaagataaagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttatgagtaaaaatcaattatagaatcagatgctacaaattt 42344756  T
Q  201 cagcttcaaatagaataa 218  Q
    || |||||||||||||||    
T  42344757 caacttcaaatagaataa 42344774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 176
Target Start/End: Complemental strand, 45557485 - 45557408
Alignment:
Q  99 ttgaagataaagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaat 176  Q
    |||||| ||||||||||||||||| |||| |||||||||| | |||||||| || |||||||||| ||||||||||||    
T  45557485 ttgaaggtaaagtgatttgtgtttggatacattcatgtaaaagtgagttgagctacaaatttgtgtgtaaaaatcaat 45557408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 40491698 - 40491600
Alignment:
Q  99 ttgaagataaagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaatcagatgctacaaa 197  Q
    |||||| ||||||||||| | ||| |||| |||||||||| | |||||| ||||| ||||||||| |||||| |||||| |||||||| | ||||||||    
T  40491698 ttgaaggtaaagtgatttatttttggatacattcatgtaaaagtgagttaaactttaaatttgtgtgtaaaagtcaattctagaatcaaaagctacaaa 40491600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 216
Target Start/End: Original strand, 38123631 - 38123748
Alignment:
Q  99 ttgaagataaagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaatcagatgctacaaat 198  Q
    |||||| |||||| |||||||||  || | |||||||||| | |||||||| |   ||||||| | ||||||||||||| |||||| ||| ||||||| |    
T  38123631 ttgaaggtaaagtaatttgtgttcggacacattcatgtaaaagtgagttgaccaataaatttgagtgtaaaaatcaattctagaattagaagctacaatt 38123730  T
Q  199 ttcagcttcaaatagaat 216  Q
    |  |||||||| ||||||    
T  38123731 tctagcttcaagtagaat 38123748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 45997794 - 45997720
Alignment:
Q  113 atttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtg-agtaaaaatcaattatagaatca 186  Q
    ||||||||||| ||| ||||||| || || ||||||||||  |||||||||  |||||||| |||||||||||||    
T  45997794 atttgtgtttaaatacattcatgcaaaaaagagttgaactataaatttgtgttgtaaaaataaattatagaatca 45997720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 175
Target Start/End: Complemental strand, 17111958 - 17111889
Alignment:
Q  106 taaagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaa 175  Q
    ||||||||||||||||| |||  |||||||||| ||||||| ||| |  ||||||||| |||| ||||||    
T  17111958 taaagtgatttgtgtttggatgcattcatgtaaaaatgagtagaattataaatttgtgtgtaagaatcaa 17111889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 182
Target Start/End: Complemental strand, 41788437 - 41788353
Alignment:
Q  98 attgaagataaagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattataga 182  Q
    ||||||| ||||||||||| |||||  ||| ||| || ||| | ||||||||||  |||||||| | || |||||||||||||||    
T  41788437 attgaaggtaaagtgatttatgtttgtatacattaatataaaagtgagttgaacagcaaatttgagtgttaaaatcaattataga 41788353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 113 - 216
Target Start/End: Original strand, 28083867 - 28083970
Alignment:
Q  113 atttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaatcagatgctacaaatttcagcttcaaata 212  Q
    |||||||||| ||||||||||||||| | |||| ||||||| ||||||||| |||||||| ||||||||||||| | ||||||||||  |||||||| ||    
T  28083867 atttgtgtttggatatattcatgtaaaagtgagctgaacttgaaatttgtgtgtaaaaattaattatagaatcaaaagctacaaattctagcttcaagta 28083966  T
Q  213 gaat 216  Q
    ||||    
T  28083967 gaat 28083970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 113 - 218
Target Start/End: Complemental strand, 1514449 - 1514344
Alignment:
Q  113 atttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaatcagatgctacaaatttcagcttcaaata 212  Q
    |||||||||| |||| |||||||||| ||||||||||||   ||||||||| |||||||||||||||| ||| | | |||||||||   |||||||| ||    
T  1514449 atttgtgtttggatacattcatgtaaaaatgagttgaacaataaatttgtgtgtaaaaatcaattatataataaaaagctacaaatcctagcttcaagta 1514350  T
Q  213 gaataa 218  Q
    ||||||    
T  1514349 gaataa 1514344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 198
Target Start/End: Complemental strand, 7524226 - 7524134
Alignment:
Q  106 taaagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaatcagatgctacaaat 198  Q
    ||||||||||||||||| || | ||| |||||| | |||||||||||  ||||||||| ||||||||||||| || ||||| | |||||||||    
T  7524226 taaagtgatttgtgtttggacacatttatgtaaaagtgagttgaactataaatttgtgtgtaaaaatcaattctataatcaaaagctacaaat 7524134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 216
Target Start/End: Complemental strand, 30557613 - 30557507
Alignment:
Q  108 aagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaatcagatgctacaaatttcagcttc 207  Q
    ||||||||||||||| |||| |||||| ||| | |||||||||||  ||||||||  || |||||||||| |||||||| |  ||||||||   ||||||    
T  30557613 aagtgatttgtgtttggatacattcatataaaagtgagttgaactataaatttgt--gtgaaaatcaattctagaatcaaaaactacaaatcctagcttc 30557516  T
Q  208 aaatagaat 216  Q
    || ||||||    
T  30557515 aactagaat 30557507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 216
Target Start/End: Complemental strand, 11049345 - 11049253
Alignment:
Q  124 gatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaatcagatgctacaaatttcagcttcaaatagaat 216  Q
    |||| ||||| |||| | ||| |||||||  ||||||||| ||||||||||||| |||||||| | |||||||||   |||||||| ||||||    
T  11049345 gatacattcacgtaaaagtgacttgaactataaatttgtgtgtaaaaatcaattttagaatcaaaagctacaaatcctagcttcaagtagaat 11049253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 180
Target Start/End: Original strand, 47411676 - 47411751
Alignment:
Q  105 ataaagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattata 180  Q
    |||||||||||||||||| |||| ||| || | | |||||||| ||||  ||||||||  ||||||||||||||||    
T  47411676 ataaagtgatttgtgtttcgataaatttattttaaaatgagtttaactataaatttgtttgtaaaaatcaattata 47411751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 109 - 216
Target Start/End: Original strand, 13384623 - 13384736
Alignment:
Q  109 agtgatttgtgtttagatatattcatgtaa---taa---tgagttgaacttcaaatttgtgagtaaaaatcaattatagaatcagatgctacaaatttca 202  Q
    |||||||||||||| |||||||||||||||   |||   |||||||||||  ||||||||| || |||||||||| |||||||| | ||||||||||| |    
T  13384623 agtgatttgtgttttgatatattcatgtaaatgtaaaagtgagttgaactataaatttgtgtgtgaaaatcaattctagaatcaaaagctacaaatttta 13384722  T
Q  203 gcttcaaatagaat 216  Q
    ||||||||||||||    
T  13384723 gcttcaaatagaat 13384736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 99 - 198
Target Start/End: Complemental strand, 35495110 - 35495011
Alignment:
Q  99 ttgaagataaagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaatcagatgctacaaat 198  Q
    ||||| |||||||||||||||||| ||||||||||||||| | | |||||||||  | ||||||| ||||||| ||||| |||||||| | |||||||||    
T  35495110 ttgaatataaagtgatttgtgtttggatatattcatgtaaaagtaagttgaactatagatttgtgtgtaaaaaacaattctagaatcaaaagctacaaat 35495011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 107 - 216
Target Start/End: Complemental strand, 32928004 - 32927895
Alignment:
Q  107 aaagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaatcagatgctacaaatttcagctt 206  Q
    |||||||||||||||| |||| |||||||||| | |||||||||||  ||||||||| |||||||| |||| || ||||| | |||||||||   |||||    
T  32928004 aaagtgatttgtgtttggatacattcatgtaaaagtgagttgaactataaatttgtgtgtaaaaatgaattctataatcaaaagctacaaatcctagctt 32927905  T
Q  207 caaatagaat 216  Q
    ||| ||||||    
T  32927904 caagtagaat 32927895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 26100111 - 26100227
Alignment:
Q  99 ttgaagataaagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaatcagatgctacaaat 198  Q
    |||||| |||||  |||||||||| |||  ||| |||||| | ||||||||||   ||||||||| |||||||||||||||||||||| | |||||||||    
T  26100111 ttgaaggtaaagctatttgtgtttggatgcatttatgtaaaagtgagttgaaccataaatttgtgtgtaaaaatcaattatagaatcaaaagctacaaat 26100210  T
Q  199 ttcagcttcaaatagaa 215  Q
       ||||||||||||||    
T  26100211 cctagcttcaaatagaa 26100227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 120 - 216
Target Start/End: Complemental strand, 38868597 - 38868501
Alignment:
Q  120 tttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaatcagatgctacaaatttcagcttcaaatagaat 216  Q
    |||||||| |||  ||||| | |||||||||||  ||||||||| || |||||||||||||||| || | ||||||||| | |||||||| ||||||    
T  38868597 tttagatacattattgtaaaattgagttgaactataaatttgtgtgtgaaaatcaattatagaaccaaaagctacaaatcttagcttcaagtagaat 38868501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 10368085 - 10368040
Alignment:
Q  99 ttgaagataaagtgatttgtgtttagatatattcatgtaataatga 144  Q
    |||||| |||||||||||||||||||||| |||||||||| |||||    
T  10368085 ttgaaggtaaagtgatttgtgtttagatacattcatgtaaaaatga 10368040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 216
Target Start/End: Original strand, 15677806 - 15677898
Alignment:
Q  125 atatattcatgtaataatgagttgaacttcaaatttgtgagt-aaaaatcaattatagaatcagatgctacaaatttcagcttcaaatagaat 216  Q
    |||||||||||||| |||||||||||||  ||||||||| || ||||||||||| || ||||| | |||| ||||   |||||||| ||||||    
T  15677806 atatattcatgtaacaatgagttgaactataaatttgtgtgtaaaaaatcaattctataatcaaaagctataaatcctagcttcaagtagaat 15677898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 218
Target Start/End: Original strand, 4662881 - 4662987
Alignment:
Q  112 gatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaatcagatgctacaaatttcagcttcaaat 211  Q
    ||||||||||| |||| ||||| | || |  ||||||||||  | ||||||| ||||||||||||| ||||| || | |||||||||   |||||||| |    
T  4662881 gatttgtgtttggatacattcacggaaaagcgagttgaactatacatttgtgtgtaaaaatcaattctagaaacaaaagctacaaatcctagcttcaagt 4662980  T
Q  212 agaataa 218  Q
    |||||||    
T  4662981 agaataa 4662987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 183
Target Start/End: Original strand, 7601942 - 7601999
Alignment:
Q  125 atatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaa 183  Q
    ||||||||||| || |||||||||||||  |||||||||  ||||||||||||||||||    
T  7601942 atatattcatgaaaaaatgagttgaacta-aaatttgtgtttaaaaatcaattatagaa 7601999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 212
Target Start/End: Original strand, 16972029 - 16972142
Alignment:
Q  99 ttgaagataaagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaatcagatgctacaaat 198  Q
    |||||| |||| ||||||||||||  ||| |||||||||| | ||| ||||||   |||||||||  |||||||||||| || ||| | |  ||||||||    
T  16972029 ttgaaggtaaaatgatttgtgtttgaatacattcatgtaaaagtgatttgaacaataaatttgtgtttaaaaatcaattctaaaattaaaaactacaaat 16972128  T
Q  199 ttcagcttcaaata 212  Q
    |  |||||||||||    
T  16972129 tctagcttcaaata 16972142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 9048006 - 9048058
Alignment:
Q  106 taaagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaat 158  Q
    |||| ||||||||||||| ||||||| || ||| |||||||||||||| ||||    
T  9048006 taaaatgatttgtgtttaaatatattaatataaaaatgagttgaactttaaat 9048058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 33184258 - 33184174
Alignment:
Q  99 ttgaagataaagtgatttgtgtttagatatattcatgtaataa-tgagttgaacttcaaatttgtgagtaaaaatcaattataga 182  Q
    ||||||||||| ||||||||||||||||| ||| ||| || || ||||||||| |  || |||||  |||||||| |||||||||    
T  33184258 ttgaagataaaatgatttgtgtttagatacatttatgaaaaaagtgagttgaattataagtttgtctgtaaaaataaattataga 33184174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 107 - 216
Target Start/End: Complemental strand, 39386745 - 39386636
Alignment:
Q  107 aaagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaatcagatgctacaaatttcagctt 206  Q
    |||||| ||| |||||| |||||||||||||| | |||||||||||| |||| |||| || ||||||||||||||||| | ||| || |||||| |||||    
T  39386745 aaagtggtttttgtttaaatatattcatgtaaaagtgagttgaactttaaatatgtgtgtgaaaatcaattatagaattaaatgttataaattttagctt 39386646  T
Q  207 caaatagaat 216  Q
     || ||||||    
T  39386645 taagtagaat 39386636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 116 - 216
Target Start/End: Original strand, 32818352 - 32818452
Alignment:
Q  116 tgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaatcagatgctacaaatttcagcttcaaatagaa 215  Q
    ||||||| |||| |||||||||| | | |||||||||  ||||||||| | ||||||||||| |||||||| | ||||||||||  ||||||||||||||    
T  32818352 tgtgtttggatacattcatgtaaaagttagttgaactataaatttgtgtgcaaaaatcaattctagaatcaaaagctacaaattctagcttcaaatagaa 32818451  T
Q  216 t 216  Q
    |    
T  32818452 t 32818452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 198
Target Start/End: Original strand, 21691186 - 21691276
Alignment:
Q  108 aagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaatcagatgctacaaat 198  Q
    ||||||||||||||| ||||||||||||||| | || ||||||||  ||||||||| || |||||||||| || || || | |||||||||    
T  21691186 aagtgatttgtgtttggatatattcatgtaaaagtgtgttgaactataaatttgtgtgtgaaaatcaattctacaaccaaaagctacaaat 21691276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 186
Target Start/End: Complemental strand, 35065176 - 35065096
Alignment:
Q  106 taaagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaatca 186  Q
    ||||||||||||||||| |||| |||||||||| | ||||| ||  |  ||||||||| ||||||||||||| ||||||||    
T  35065176 taaagtgatttgtgtttggatacattcatgtaaaagtgagtggagatataaatttgtgtgtaaaaatcaattctagaatca 35065096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 216
Target Start/End: Original strand, 8604594 - 8604704
Alignment:
Q  106 taaagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaatcagatgctacaaatttcagct 205  Q
    ||||||||||| ||||| |||| |||||||||| | ||  || ||||  ||||||||| || |||||||||| |||||||  | ||||||||| | ||||    
T  8604594 taaagtgatttatgtttggatacattcatgtaaaagtgcattcaactataaatttgtgtgtgaaaatcaattctagaatcgaaagctacaaatcttagct 8604693  T
Q  206 tcaaatagaat 216  Q
    |||| ||||||    
T  8604694 tcaagtagaat 8604704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 1616503 - 1616410
Alignment:
Q  106 taaagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaatcagatgctacaaatt 199  Q
    ||||||| |||||||||  ||| |||||||||| |||||||||||||| |||  |||| ||   |||||||| |||||||| | ||||||||||    
T  1616503 taaagtggtttgtgtttgaatacattcatgtaaaaatgagttgaactttaaacatgtgtgtgggaatcaattctagaatcaaaagctacaaatt 1616410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 30357576 - 30357515
Alignment:
Q  155 aaatttgtgagtaaaaatcaattatagaatcagatgctacaaatttcagcttcaaatagaat 216  Q
    ||||||||| |||||||||||||||| ||||| | |||||||||  ||||||||| ||||||    
T  30357576 aaatttgtgtgtaaaaatcaattatataatcaaaagctacaaatcacagcttcaagtagaat 30357515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 33843824 - 33843779
Alignment:
Q  106 taaagtgatttgtgtttagatatattcatgtaataatgagttgaac 151  Q
    ||||||||||| ||||| ||||||||||||||||| ||||||||||    
T  33843824 taaagtgatttatgtttggatatattcatgtaatagtgagttgaac 33843779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 216
Target Start/End: Complemental strand, 38845552 - 38845446
Alignment:
Q  111 tgatttgtgtttagatatattcatgtaataa-tgagttgaacttcaaatttgtgagtaaaaatcaattatagaatcagatgctacaaatttcagcttcaa 209  Q
    |||||||||||| ||||||||||||||| || |||||| ||||  | ||||||| || |||||||||| |||||||| |  |||||||| | ||||||||    
T  38845552 tgatttgtgtttggatatattcatgtaaaaagtgagtttaactatatatttgtgtgtgaaaatcaattctagaatcaaaaactacaaatcttagcttcaa 38845453  T
Q  210 atagaat 216  Q
     ||||||    
T  38845452 gtagaat 38845446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 42858220 - 42858143
Alignment:
Q  107 aaagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaat 184  Q
    |||||||| |||||||  ||| |||||||||| | |||||||||||  ||||||||| || |||||||||||||||||    
T  42858220 aaagtgatctgtgtttgaataaattcatgtaaaagtgagttgaactataaatttgtgtgtgaaaatcaattatagaat 42858143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 216
Target Start/End: Complemental strand, 39097359 - 39097249
Alignment:
Q  106 taaagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaatcagatgctacaaatttcagct 205  Q
    ||||||| ||||||||| |||  ||| |||||| | |  ||||||||| |||||| || || ||||||||||||| ||| | | | ||||||||| ||||    
T  39097359 taaagtggtttgtgttttgattcatttatgtaaaagtaggttgaactttaaatttatgtgtgaaaatcaattatataattaaaagttacaaattttagct 39097260  T
Q  206 tcaaatagaat 216  Q
    |||| ||||||    
T  39097259 tcaagtagaat 39097249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 198
Target Start/End: Original strand, 6951277 - 6951369
Alignment:
Q  106 taaagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaatcagatgctacaaat 198  Q
    |||| ||| |||| ||| |||| |||||||||| | ||| ||||| |  |||||| || ||| |||||||||||||||||| | |||||||||    
T  6951277 taaaatgacttgtatttggataaattcatgtaaaagtgaattgaattataaatttatgtgtacaaatcaattatagaatcaaaagctacaaat 6951369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 15368584 - 15368496
Alignment:
Q  108 aagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaatcagatgctacaa 196  Q
    ||||||||| |||||  ||| || ||||||| | ||| ||||||  || ||||| | ||||| |||||||||||||||||| |||||||    
T  15368584 aagtgatttatgtttgaatacatccatgtaaaagtgacttgaacaacatatttgagtgtaaagatcaattatagaatcagaagctacaa 15368496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 13912899 - 13912822
Alignment:
Q  107 aaagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaat 184  Q
    |||||||||||||||| |||| | |||||||| ||||||||||||   ||||||||| |||||||| |||| ||||||    
T  13912899 aaagtgatttgtgtttggatacaatcatgtaaaaatgagttgaacggtaaatttgtgtgtaaaaattaattctagaat 13912822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 212
Target Start/End: Original strand, 33019129 - 33019234
Alignment:
Q  107 aaagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaatcagatgctacaaatttcagctt 206  Q
    |||||||||||||||| |||  |||||||||| | |||||||||||  |||||| || || |||||||||| || || || | ||||||||||  |||||    
T  33019129 aaagtgatttgtgtttggatgcattcatgtaaaagtgagttgaactataaatttatgtgtgaaaatcaattctaaaaccaaaagctacaaattctagctt 33019228  T
Q  207 caaata 212  Q
    ||||||    
T  33019229 caaata 33019234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 209
Target Start/End: Complemental strand, 44439367 - 44439264
Alignment:
Q  106 taaagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaatcagatgctacaaatttcagct 205  Q
    ||||||||||| ||||| ||||| || |||||| | ||||||||||   ||||||| | || |||||||||| |||||||| | ||| ||||||| ||||    
T  44439367 taaagtgatttatgtttggatatgtttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattttagaatcaaaagctccaaattttagct 44439268  T
Q  206 tcaa 209  Q
    ||||    
T  44439267 tcaa 44439264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 216
Target Start/End: Complemental strand, 42741089 - 42740980
Alignment:
Q  106 taaagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaatcagatgctacaaatttcagct 205  Q
    |||||||||||||||||  ||| ||| |||||| | ||||||| ||   ||||||| | ||||||||||||| |||||||| | ||||||||| | ||||    
T  42741089 taaagtgatttgtgtttgaatacatt-atgtaaaagtgagttggacagtaaatttgagtgtaaaaatcaattctagaatcaaaagctacaaatcttagct 42740991  T
Q  206 tcaaatagaat 216  Q
    |||| ||||||    
T  42740990 tcaagtagaat 42740980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 16518891 - 16518827
Alignment:
Q  106 taaagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaa 170  Q
    |||| |||||||||||| |||| |||||||||| | |||||||||||  ||||||||| ||||||    
T  16518891 taaaatgatttgtgtttggatacattcatgtaaaagtgagttgaactataaatttgtgcgtaaaa 16518827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 199
Target Start/End: Complemental strand, 32596103 - 32596011
Alignment:
Q  107 aaagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaatcagatgctacaaatt 199  Q
    ||||||| |||||||| |||||||| |||||| | ||||||||| |   |||||||  ||||||||||||| |||||||| | | ||||||||    
T  32596103 aaagtgaattgtgtttggatatatttatgtaaaagtgagttgaattatgaatttgtatgtaaaaatcaattttagaatcaaaagttacaaatt 32596011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 186
Target Start/End: Complemental strand, 33502347 - 33502270
Alignment:
Q  106 taaagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaatca 186  Q
    ||||||||||||||||| |||| |||   |||| | |||||||||||  |||| |||| ||||||||||||| ||||||||    
T  33502347 taaagtgatttgtgtttggatacatt---gtaaaagtgagttgaactataaatatgtgtgtaaaaatcaattttagaatca 33502270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 41494102 - 41494143
Alignment:
Q  165 gtaaaaatcaattatagaatcagatgctacaaatttcagctt 206  Q
    |||||||||||||||| ||||||| ||||||| |||||||||    
T  41494102 gtaaaaatcaattataaaatcagaagctacaattttcagctt 41494143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 199
Target Start/End: Complemental strand, 22536110 - 22536018
Alignment:
Q  107 aaagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaatcagatgctacaaatt 199  Q
    |||||||||||||||| |||| ||| |||||| |||||||| ||||  |||| |||| | |||||| |||| || ||||| | ||| ||||||    
T  22536110 aaagtgatttgtgtttggatacatttatgtaaaaatgagtttaactataaatatgtgtgcaaaaattaattctaaaatcaaaagcttcaaatt 22536018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 212
Target Start/End: Original strand, 434209 - 434315
Alignment:
Q  106 taaagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaatcagatgctacaaatttcagct 205  Q
    |||| |||||||||||| ||||||||| ||||| | ||||||||| || |||||| ||  |||||||||||| || ||||| | ||||  ||||| | ||    
T  434209 taaaatgatttgtgtttggatatattcgtgtaaaagtgagttgaaatttaaatttatgtataaaaatcaattctaaaatcaaaagctattaattttaact 434308  T
Q  206 tcaaata 212  Q
    |||||||    
T  434309 tcaaata 434315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 196
Target Start/End: Complemental strand, 17225960 - 17225875
Alignment:
Q  111 tgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaatcagatgctacaa 196  Q
    |||| |||| || |||| |||||||||| | |||||||||||  ||||||||  ||||||||||||| |||||||| | |||||||    
T  17225960 tgatatgtggtttgatacattcatgtaaaactgagttgaactataaatttgtatgtaaaaatcaattctagaatcaaaagctacaa 17225875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 25195339 - 25195416
Alignment:
Q  107 aaagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaat 184  Q
    |||||||||||||||| |||| ||| |||||| | ||||||||| |  |||||||||  | |||||||||||||||||    
T  25195339 aaagtgatttgtgtttggatacatttatgtaaaagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaat 25195416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 198
Target Start/End: Complemental strand, 3482158 - 3482067
Alignment:
Q  107 aaagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaatcagatgctacaaat 198  Q
    ||||||||||||||||  ||| |||||||||| | | |||||||||  ||| ||||| || |||||||||| || ||||| | |||||||||    
T  3482158 aaagtgatttgtgtttgaatacattcatgtaaaagtaagttgaactataaacttgtgtgtgaaaatcaattctaaaatcaaaggctacaaat 3482067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 184
Target Start/End: Original strand, 5724594 - 5724680
Alignment:
Q  98 attgaagataaagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaat 184  Q
    ||||||| |||||||||||||||||  |||| ||||| ||| | |||||| ||    | ||||||| ||||||||||||||||||||    
T  5724594 attgaaggtaaagtgatttgtgtttgaatatgttcatataaaagtgagttaaatgatatatttgtgtgtaaaaatcaattatagaat 5724680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 193
Target Start/End: Complemental strand, 34621006 - 34620912
Alignment:
Q  99 ttgaagataaagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaatcagatgcta 193  Q
    |||||| ||||||||||| ||||| |||| ||| |||||| | |||||||||    ||||||  | ||||||||||||| |||||||||| ||||    
T  34621006 ttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttagtgtaaaaatcaattctagaatcagaagcta 34620912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 193
Target Start/End: Complemental strand, 34748443 - 34748349
Alignment:
Q  99 ttgaagataaagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaatcagatgcta 193  Q
    |||||| ||||||||||| ||||| |||| ||| |||||| | |||||||||    ||||||  | ||||||||||||| |||||||||| ||||    
T  34748443 ttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttagtgtaaaaatcaattctagaatcagaagcta 34748349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 186
Target Start/End: Original strand, 34027404 - 34027469
Alignment:
Q  121 ttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaatca 186  Q
    |||||||||||||||||| | |||||||||    ||||||| | ||||||||||||| ||||||||    
T  34027404 ttagatatattcatgtaagagtgagttgaataataaatttgagtgtaaaaatcaattctagaatca 34027469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 198
Target Start/End: Original strand, 32523299 - 32523404
Alignment:
Q  99 ttgaagataaagtgatttgtgtttagat------atattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaatcagatgct 192  Q
    |||||||||||||||||||||||| |||      || ||||||||  | |||||| ||||  ||||||||| ||||||||||||| |||||||| | |||    
T  32523299 ttgaagataaagtgatttgtgtttggatgcattcatgttcatgtataagtgagttaaactctaaatttgtgtgtaaaaatcaattttagaatcaaaagct 32523398  T
Q  193 acaaat 198  Q
    ||||||    
T  32523399 acaaat 32523404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 44771771 - 44771714
Alignment:
Q  142 tgagttgaacttcaaatttgtgagtaaaaatcaattatagaatcagatgctacaaatt 199  Q
    ||||||||||||||||||  || ||||||||||||| |||||||| | ||||||||||    
T  44771771 tgagttgaacttcaaattaatgtgtaaaaatcaattttagaatcaaaagctacaaatt 44771714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 217
Target Start/End: Original strand, 27266766 - 27266877
Alignment:
Q  106 taaagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaatcagatgctacaaatttcagct 205  Q
    ||||||||||| ||||||||||| ||||||||| | | ||||||||   ||||||| | |||||||| |||| | ||||||   ||||||| ||  ||||    
T  27266766 taaagtgatttatgtttagatattttcatgtaaaagttagttgaacaataaatttgagtgtaaaaattaattcttgaatcattagctacaatttctagct 27266865  T
Q  206 tcaaatagaata 217  Q
    |||| |||||||    
T  27266866 tcaagtagaata 27266877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 198
Target Start/End: Complemental strand, 31013134 - 31013039
Alignment:
Q  103 agataaagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaatcagatgctacaaat 198  Q
    |||||||||||||||||||| |||  |||||||||  | ||||||||| |  ||||||||| || | |||||||| |||| ||| | |||||||||    
T  31013134 agataaagtgatttgtgtttggatgcattcatgtacaagtgagttgaattctaaatttgtgtgttagaatcaattctagattcaaaggctacaaat 31013039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 136
Target Start/End: Complemental strand, 1114958 - 1114921
Alignment:
Q  99 ttgaagataaagtgatttgtgtttagatatattcatgt 136  Q
    ||||| ||||||||||||||||||| ||||||||||||    
T  1114958 ttgaatataaagtgatttgtgtttatatatattcatgt 1114921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 215
Target Start/End: Complemental strand, 52364159 - 52364055
Alignment:
Q  111 tgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaatcagatgctacaaatttcagcttcaaa 210  Q
    ||||||||||||| |||  || |||||| | |||||||||||  |||||| ||  | ||||||||||||||||||| | |||| ||||   ||||||||     
T  52364159 tgatttgtgtttaaataattttatgtaaaagtgagttgaactgtaaatttatgtttgaaaatcaattatagaatcaaaagctataaatcatagcttcaag 52364060  T
Q  211 tagaa 215  Q
    |||||    
T  52364059 tagaa 52364055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 186
Target Start/End: Original strand, 14079 - 14166
Alignment:
Q  99 ttgaagataaagtgatttgtgtttagatatattcatgtaataatgagttgaacttcaaatttgtgagtaaaaatcaattatagaatca 186  Q
    |||||| ||||||||||| ||||| |||| |||||||| | | |||||||||    ||||||| | ||||||||||||| ||||||||    
T  14079 ttgaaggtaaagtgatttatgtttggatacattcatgtgaaagtgagttgaaaaataaatttgagtgtaaaaatcaattctagaatca 14166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University