View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3090_low_78 (Length: 207)

Name: NF3090_low_78
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3090_low_78
NF3090_low_78
[»] chr8 (8 HSPs)
chr8 (26-189)||(22635733-22635896)
chr8 (26-189)||(3189140-3189306)
chr8 (26-138)||(22816026-22816140)
chr8 (26-65)||(41958172-41958211)
chr8 (26-67)||(40841227-40841269)
chr8 (82-172)||(44436441-44436530)
chr8 (26-64)||(44436540-44436578)
chr8 (81-138)||(44436438-44436495)
[»] chr5 (9 HSPs)
chr5 (26-187)||(25101630-25101791)
chr5 (26-187)||(25160723-25160884)
chr5 (26-138)||(6309112-6309224)
chr5 (120-189)||(42861752-42861821)
chr5 (26-122)||(104644-104741)
chr5 (11-65)||(42861832-42861886)
chr5 (71-138)||(6309076-6309143)
chr5 (26-65)||(40691292-40691331)
chr5 (27-65)||(30910215-30910253)
[»] chr4 (10 HSPs)
chr4 (26-138)||(69708-69820)
chr4 (26-138)||(42899921-42900034)
chr4 (26-65)||(55162571-55162610)
chr4 (26-68)||(2761810-2761852)
chr4 (84-138)||(55162605-55162661)
chr4 (118-174)||(13652886-13652942)
chr4 (118-174)||(13661011-13661067)
chr4 (26-65)||(40459368-40459407)
chr4 (81-135)||(69675-69729)
chr4 (26-61)||(49499523-49499559)
[»] chr2 (10 HSPs)
chr2 (26-138)||(44788928-44789040)
chr2 (120-181)||(35670552-35670613)
chr2 (26-68)||(12774142-12774184)
chr2 (26-65)||(18292444-18292483)
chr2 (26-65)||(35670502-35670541)
chr2 (26-65)||(40729177-40729216)
chr2 (82-134)||(34397615-34397667)
chr2 (26-65)||(40447898-40447937)
chr2 (82-136)||(18292492-18292546)
chr2 (26-67)||(41340003-41340044)
[»] chr3 (6 HSPs)
chr3 (26-128)||(17542406-17542508)
chr3 (26-65)||(5004470-5004509)
chr3 (26-65)||(7336444-7336483)
chr3 (26-67)||(9104595-9104637)
chr3 (26-65)||(16975737-16975776)
chr3 (66-108)||(11937650-11937692)
[»] chr7 (10 HSPs)
chr7 (120-189)||(48653597-48653666)
chr7 (26-65)||(10288541-10288580)
chr7 (26-65)||(40106227-40106266)
chr7 (26-67)||(22078090-22078132)
chr7 (28-65)||(49170055-49170092)
chr7 (26-65)||(48653547-48653586)
chr7 (26-67)||(11036096-11036138)
chr7 (82-171)||(12911491-12911580)
chr7 (97-134)||(49170116-49170153)
chr7 (26-61)||(21491197-21491233)
[»] chr6 (5 HSPs)
chr6 (122-189)||(13773185-13773252)
chr6 (26-65)||(10751310-10751349)
chr6 (26-65)||(23260364-23260403)
chr6 (26-67)||(32449967-32450009)
chr6 (26-65)||(13773133-13773172)
[»] chr1 (13 HSPs)
chr1 (120-189)||(25921825-25921894)
chr1 (26-138)||(6836326-6836432)
chr1 (143-189)||(18472711-18472757)
chr1 (26-65)||(18472638-18472677)
chr1 (26-65)||(43407117-43407156)
chr1 (26-67)||(35761754-35761796)
chr1 (26-65)||(338525-338564)
chr1 (26-65)||(8421979-8422018)
chr1 (26-65)||(9537141-9537180)
chr1 (26-65)||(16075159-16075198)
chr1 (26-65)||(33007401-33007440)
chr1 (26-65)||(37666928-37666967)
chr1 (81-135)||(6836293-6836347)
[»] scaffold0013 (1 HSPs)
scaffold0013 (26-138)||(242745-242862)
[»] scaffold1838 (1 HSPs)
scaffold1838 (86-134)||(542-590)


Alignment Details
Target: chr8 (Bit Score: 132; Significance: 9e-69; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 26 - 189
Target Start/End: Original strand, 22635733 - 22635896
Alignment:
Q  26 caccacacagatgcatatgcaatgcatgatcatgaaaatgaatgcaatatgatattaacccgccactgaagcaccacacagaatgtaattgcaacccgcc 125  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||    
T  22635733 caccacacagatgcatatgccatgcatgatcatgaaaatgaatgcaatatgatattaacccgccactgaggcaccacacagaatataattgcaacctgcc 22635832  T
Q  126 actaaggcaccaccaataattataagtttaacccgccactaaggcacacgaaaaatgcatatgt 189  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||| | ||||||||||||||    
T  22635833 actaaggcaccaccaataattataagtttaacccgccattaaagcactccaaaaatgcatatgt 22635896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 26 - 189
Target Start/End: Original strand, 3189140 - 3189306
Alignment:
Q  26 caccacacagatgcatatgcaatgcatgatcatgaaaatgaatgcaatatgatattaacccgccactgaagcaccacacagaatgtaattgcaacccgcc 125  Q
    ||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||| |||||||||||||||    
T  3189140 caccacacaaatgcatatgtcatgcatgatcatgaaaatgaatgcaatatgatattaatccgccaccgaggcaccacacagaatataattgcaacccgcc 3189239  T
Q  126 actaaggcaccaccaataattataagttta---acccgccactaaggcacacgaaaaatgcatatgt 189  Q
    |||||||||||||||| |||||||||||||   ||||||||||||||||||| ||||||||||||||    
T  3189240 actaaggcaccaccaagaattataagtttaattacccgccactaaggcacaccaaaaatgcatatgt 3189306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 26 - 138
Target Start/End: Original strand, 22816026 - 22816140
Alignment:
Q  26 caccacacagatgcatatgcaatgcatgatcatgaaaatgaatgcaatatgatattaacccgccactgaagcaccacacagaatgtaattgcaacc--cg 123  Q
    |||| ||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||| | |||||||||| ||| |||||| ||||  ||    
T  22816026 caccgcacagatgcatatgccatgcatgatcatgaaaataaatgcagtatgatattaacccgccactaaggcaccacacataatataattgtaacccgcg 22816125  T
Q  124 ccactaaggcaccac 138  Q
    |||||||||||||||    
T  22816126 ccactaaggcaccac 22816140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 41958172 - 41958211
Alignment:
Q  26 caccacacagatgcatatgcaatgcatgatcatgaaaatg 65  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  41958172 caccacacagatgcatatgccatgcatgatcatgaaaatg 41958211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 40841227 - 40841269
Alignment:
Q  26 caccacacagatgcatatgc-aatgcatgatcatgaaaatgaa 67  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  40841227 caccacacagatgcatatgctaatgcatgatcatgaaaatgaa 40841269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 172
Target Start/End: Complemental strand, 44436530 - 44436441
Alignment:
Q  82 aacccgccactgaagcaccacacagaatgtaattgcaacccgccactaaggcaccaccaataattataagtttaacccgccactaaggcac 172  Q
    ||||| ||||| | |||||||||||||| |||||  ||||||| |||||||||||||  | || ||||| | |||||||| ||||||||||    
T  44436530 aacccaccactaaggcaccacacagaatataattataacccgcaactaaggcaccacacagaa-tataattataacccgcaactaaggcac 44436441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 64
Target Start/End: Complemental strand, 44436578 - 44436540
Alignment:
Q  26 caccacacagatgcatatgcaatgcatgatcatgaaaat 64  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  44436578 caccacacagatgcatatgccaagcatgatcatgaaaat 44436540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 44436495 - 44436438
Alignment:
Q  81 taacccgccactgaagcaccacacagaatgtaattgcaacccgccactaaggcaccac 138  Q
    |||||||| ||| | |||||||||||||| |||||  ||||||| |||||||||||||    
T  44436495 taacccgcaactaaggcaccacacagaatataattataacccgcaactaaggcaccac 44436438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 26 - 187
Target Start/End: Original strand, 25101630 - 25101791
Alignment:
Q  26 caccacacagatgcatatgcaatgcatgatcatgaaaatgaatgcaatatgatattaacccgccactgaagcaccacacagaatgtaattgcaacccgcc 125  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||| |||||||||||    
T  25101630 caccacacagatgcatataccatgcatgatcatgaaaatgaatgcaatatgatattaacctgccactgaggcaccacacagaatataagtgcaacccgcc 25101729  T
Q  126 actaaggcaccaccaataattataagtttaacccgccactaaggcacacgaaaaatgcatat 187  Q
    ||||||||| |||||| ||||||||||||||||||||||||||| |||  ||||||||||||    
T  25101730 actaaggcaacaccaagaattataagtttaacccgccactaaggtacatcaaaaatgcatat 25101791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 26 - 187
Target Start/End: Original strand, 25160723 - 25160884
Alignment:
Q  26 caccacacagatgcatatgcaatgcatgatcatgaaaatgaatgcaatatgatattaacccgccactgaagcaccacacagaatgtaattgcaacccgcc 125  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||| |||||||||||    
T  25160723 caccacacagatgcatataccatgcatgatcatgaaaatgaatgcaatatgatattaacctgccactgaggcaccacacagaatataagtgcaacccgcc 25160822  T
Q  126 actaaggcaccaccaataattataagtttaacccgccactaaggcacacgaaaaatgcatat 187  Q
    ||||||||| |||||| ||||||||||||||||||||||||||| |||  ||||||||||||    
T  25160823 actaaggcaacaccaagaattataagtttaacccgccactaaggtacatcaaaaatgcatat 25160884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 26 - 138
Target Start/End: Complemental strand, 6309224 - 6309112
Alignment:
Q  26 caccacacagatgcatatgcaatgcatgatcatgaaaatgaatgcaatatgatattaacccgccactgaagcaccacacagaatgtaattgcaacccgcc 125  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||| |||| | ||||||||    
T  6309224 caccacacagatgcatatgccatgcatgatcatgaaaataaatgcaatatgatattaacccgccactaaggcaccacacagaatataatagtaacccgcc 6309125  T
Q  126 actaaggcaccac 138  Q
    |||||||||||||    
T  6309124 actaaggcaccac 6309112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 189
Target Start/End: Complemental strand, 42861821 - 42861752
Alignment:
Q  120 cccgccactaaggcaccaccaataattataagtttaacccgccactaaggcacacgaaaaatgcatatgt 189  Q
    ||||||||  ||||||||| || |||||||||||||||||||||||||||||||| |||||||| |||||    
T  42861821 cccgccacataggcaccacaaagaattataagtttaacccgccactaaggcacaccaaaaatgcttatgt 42861752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 104741 - 104644
Alignment:
Q  26 caccacacagatgcatatgc-aatgcatgatcatgaaaatgaatgcaatatgatattaacccgccactgaagcaccacacagaatgtaattgcaaccc 122  Q
    ||||||| |||||||||||| ||| ||||||||||||||| |||||||||||||||| ||| | |||| |  ||||||||| ||| |||||| |||||    
T  104741 caccacagagatgcatatgctaatacatgatcatgaaaataaatgcaatatgatatttacctgtcactaagacaccacacataatataattgtaaccc 104644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 42861886 - 42861832
Alignment:
Q  11 cacagagaaataatccaccacacagatgcatatgcaatgcatgatcatgaaaatg 65  Q
    |||| |||||||| || |||||||||||||||||| |||||||||||||||||||    
T  42861886 cacacagaaataacccgccacacagatgcatatgctatgcatgatcatgaaaatg 42861832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 6309143 - 6309076
Alignment:
Q  71 aatatgatattaacccgccactgaagcaccacacagaatgtaattgcaacccgccactaaggcaccac 138  Q
    ||||| ||| |||||||||||| | |||||||||||||| |||| | |||||||||||||| ||||||    
T  6309143 aatataatagtaacccgccactaaggcaccacacagaatataatagtaacccgccactaagacaccac 6309076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 65
Target Start/End: Complemental strand, 40691331 - 40691292
Alignment:
Q  26 caccacacagatgcatatgcaatgcatgatcatgaaaatg 65  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  40691331 caccacacagatgcatatgccttgcatgatcatgaaaatg 40691292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 30910253 - 30910215
Alignment:
Q  27 accacacagatgcatatgcaatgcatgatcatgaaaatg 65  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  30910253 accacacagatgcatatgccatgcatgatcatggaaatg 30910215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 26 - 138
Target Start/End: Complemental strand, 69820 - 69708
Alignment:
Q  26 caccacacagatgcatatgcaatgcatgatcatgaaaatgaatgcaatatgatattaacccgccactgaagcaccacacagaatgtaattgcaacccgcc 125  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||| |||| | ||||||||    
T  69820 caccacacagatgcatatgccatgcatgatcatgaaaataaatgcaatatgatattaacccgccactaaggcaccacacagaatataatcgtaacccgcc 69721  T
Q  126 actaaggcaccac 138  Q
    |||||||||||||    
T  69720 actaaggcaccac 69708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 138
Target Start/End: Original strand, 42899921 - 42900034
Alignment:
Q  26 caccacacagatgcatatgc-aatgcatgatcatgaaaatgaatgcaatatgatattaacccgccactgaagcaccacacagaatgtaattgcaacccgc 124  Q
    ||||||||||||||||||   |||||||||| |||||||| ||||||||||||||| | | || |||| || ||||||||||||| |||||| |||  |     
T  42899921 caccacacagatgcatatattaatgcatgattatgaaaataaatgcaatatgatataatctcgtcactaaaacaccacacagaatataattgtaacatgt 42900020  T
Q  125 cactaaggcaccac 138  Q
    ||||||||||||||    
T  42900021 cactaaggcaccac 42900034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 65
Target Start/End: Complemental strand, 55162610 - 55162571
Alignment:
Q  26 caccacacagatgcatatgcaatgcatgatcatgaaaatg 65  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  55162610 caccacacagatgcatatgccatgcatgatcatgaaaatg 55162571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 2761810 - 2761852
Alignment:
Q  26 caccacacagatgcatatgcaatgcatgatcatgaaaatgaat 68  Q
    ||||||||| |||||||||| ||||||||||||||||||||||    
T  2761810 caccacacaaatgcatatgccatgcatgatcatgaaaatgaat 2761852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 138
Target Start/End: Complemental strand, 55162661 - 55162605
Alignment:
Q  84 cccgccactgaagcaccacacagaatgtaattgcaa--cccgccactaaggcaccac 138  Q
    ||||||||| | |||||||||||||| |||||||||  |||||||||||||||||||    
T  55162661 cccgccactaaggcaccacacagaatataattgcaattcccgccactaaggcaccac 55162605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 13652942 - 13652886
Alignment:
Q  118 aacccgccactaaggcaccaccaataattataagtttaacccgccactaaggcacac 174  Q
    ||||||||||| ||| ||||| || ||| |||||||||||||||||| |||||||||    
T  13652942 aacccgccacttaggtaccacaaagaataataagtttaacccgccacaaaggcacac 13652886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 13661067 - 13661011
Alignment:
Q  118 aacccgccactaaggcaccaccaataattataagtttaacccgccactaaggcacac 174  Q
    ||||||||||| ||| ||||| || ||| |||||||||||||||||| |||||||||    
T  13661067 aacccgccacttaggtaccacaaagaataataagtttaacccgccacaaaggcacac 13661011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 65
Target Start/End: Complemental strand, 40459407 - 40459368
Alignment:
Q  26 caccacacagatgcatatgcaatgcatgatcatgaaaatg 65  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  40459407 caccacacagatgcatatgacatgcatgatcatgaaaatg 40459368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 135
Target Start/End: Complemental strand, 69729 - 69675
Alignment:
Q  81 taacccgccactgaagcaccacacagaatgtaattgcaacccgccactaaggcac 135  Q
    |||||||||||| | |||||||||||||| |||| | ||||||||||| ||||||    
T  69729 taacccgccactaaggcaccacacagaatataatagtaacccgccacttaggcac 69675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 49499559 - 49499523
Alignment:
Q  26 caccacacagatgcatatgc-aatgcatgatcatgaa 61  Q
    |||||||||||||||||||| ||||||||||||||||    
T  49499559 caccacacagatgcatatgctaatgcatgatcatgaa 49499523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 6e-36; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 26 - 138
Target Start/End: Complemental strand, 44789040 - 44788928
Alignment:
Q  26 caccacacagatgcatatgcaatgcatgatcatgaaaatgaatgcaatatgatattaacccgccactgaagcaccacacagaatgtaattgcaacccgcc 125  Q
    ||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||| ||||||||| | |||||||||||||| |||||| ||||| ||    
T  44789040 caccacacagatgcatatgccttgcatgatcatgaaaataaatgcaatatgatattagcccgccactaaggcaccacacagaatataattgtaaccctcc 44788941  T
Q  126 actaaggcaccac 138  Q
    |||||||||||||    
T  44788940 actaaggcaccac 44788928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 35670552 - 35670613
Alignment:
Q  120 cccgccactaaggcaccaccaataattataagtttaacccgccactaaggcacacgaaaaat 181  Q
    ||||||||  ||||||||| || |||||||||||||||||||||||||||||||| ||||||    
T  35670552 cccgccacataggcaccacaaagaattataagtttaacccgccactaaggcacaccaaaaat 35670613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 12774142 - 12774184
Alignment:
Q  26 caccacacagatgcatatgcaatgcatgatcatgaaaatgaat 68  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  12774142 caccacacagatgcatatgcgatgcatgatcatgaaaatgaat 12774184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 18292444 - 18292483
Alignment:
Q  26 caccacacagatgcatatgcaatgcatgatcatgaaaatg 65  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  18292444 caccacacagatgcatatgccatgcatgatcatgaaaatg 18292483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 35670502 - 35670541
Alignment:
Q  26 caccacacagatgcatatgcaatgcatgatcatgaaaatg 65  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  35670502 caccacacagatgcatatgctatgcatgatcatgaaaatg 35670541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 40729177 - 40729216
Alignment:
Q  26 caccacacagatgcatatgcaatgcatgatcatgaaaatg 65  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  40729177 caccacacagatgcatatgccatgcatgatcatgaaaatg 40729216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 34397615 - 34397667
Alignment:
Q  82 aacccgccactgaagcaccacacagaatgtaattgcaacccgccactaaggca 134  Q
    ||||||||||| | |||||||||||||| |||||  |||||||||||||||||    
T  34397615 aacccgccactaaggcaccacacagaatataattataacccgccactaaggca 34397667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 65
Target Start/End: Complemental strand, 40447937 - 40447898
Alignment:
Q  26 caccacacagatgcatatgcaatgcatgatcatgaaaatg 65  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  40447937 caccacacagatgcatatgacatgcatgatcatgaaaatg 40447898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 18292492 - 18292546
Alignment:
Q  82 aacccgccactgaagcaccacacagaatgtaattgcaacccgccactaaggcacc 136  Q
    ||||||||||| | |||||||||| ||| |||||  |||||||||||||||||||    
T  18292492 aacccgccactaaggcaccacacaaaatataattataacccgccactaaggcacc 18292546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 41340003 - 41340044
Alignment:
Q  26 caccacacagatgcatatgcaatgcatgatcatgaaaatgaa 67  Q
    |||||||||| ||||||||| ||||||| |||||||||||||    
T  41340003 caccacacaggtgcatatgccatgcatggtcatgaaaatgaa 41340044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 6e-30; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 26 - 128
Target Start/End: Original strand, 17542406 - 17542508
Alignment:
Q  26 caccacacagatgcatatgcaatgcatgatcatgaaaatgaatgcaatatgatattaacccgccactgaagcaccacacagaatgtaattgcaacccgcc 125  Q
    |||||||||||| ||||||| ||||||||||| |||||| ||||||||||||||||||||||||||| | |||||||||||||| |||| | ||||||||    
T  17542406 caccacacagatacatatgcgatgcatgatcacgaaaataaatgcaatatgatattaacccgccactaaggcaccacacagaatataatagtaacccgcc 17542505  T
Q  126 act 128  Q
    |||    
T  17542506 act 17542508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 5004470 - 5004509
Alignment:
Q  26 caccacacagatgcatatgcaatgcatgatcatgaaaatg 65  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  5004470 caccacacagatgcatatgccatgcatgatcatgaaaatg 5004509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 7336444 - 7336483
Alignment:
Q  26 caccacacagatgcatatgcaatgcatgatcatgaaaatg 65  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  7336444 caccacacagatgcatatgccatgcatgatcatgaaaatg 7336483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 9104637 - 9104595
Alignment:
Q  26 caccacacagatgcatatgc-aatgcatgatcatgaaaatgaa 67  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  9104637 caccacacagatgcatatgctaatgcatgatcatgaaaatgaa 9104595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 65
Target Start/End: Complemental strand, 16975776 - 16975737
Alignment:
Q  26 caccacacagatgcatatgcaatgcatgatcatgaaaatg 65  Q
    |||||||||||||||||||| ||| |||||||||||||||    
T  16975776 caccacacagatgcatatgccatggatgatcatgaaaatg 16975737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 11937650 - 11937692
Alignment:
Q  66 aatgcaatatgatattaacccgccactgaagcaccacacagaa 108  Q
    ||||||||||||||||| ||||||||| | |||||||||||||    
T  11937650 aatgcaatatgatattatcccgccactaaggcaccacacagaa 11937692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 8e-20; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 120 - 189
Target Start/End: Original strand, 48653597 - 48653666
Alignment:
Q  120 cccgccactaaggcaccaccaataattataagtttaacccgccactaaggcacacgaaaaatgcatatgt 189  Q
    ||||||||| ||||||||| || |||||||||||||||||||||||||||||||| |||||||| |||||    
T  48653597 cccgccacttaggcaccacaaagaattataagtttaacccgccactaaggcacaccaaaaatgcttatgt 48653666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 10288541 - 10288580
Alignment:
Q  26 caccacacagatgcatatgcaatgcatgatcatgaaaatg 65  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  10288541 caccacacagatgcatatgccatgcatgatcatgaaaatg 10288580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 65
Target Start/End: Complemental strand, 40106266 - 40106227
Alignment:
Q  26 caccacacagatgcatatgcaatgcatgatcatgaaaatg 65  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  40106266 caccacacagatgcatatgccatgcatgatcatgaaaatg 40106227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 22078132 - 22078090
Alignment:
Q  26 caccacacagatgcatatgc-aatgcatgatcatgaaaatgaa 67  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  22078132 caccacacagatgcatatgctaatgcatgatcatgaaaatgaa 22078090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 49170055 - 49170092
Alignment:
Q  28 ccacacagatgcatatgcaatgcatgatcatgaaaatg 65  Q
    |||||||||||||||||| |||||||||||||||||||    
T  49170055 ccacacagatgcatatgccatgcatgatcatgaaaatg 49170092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 48653547 - 48653586
Alignment:
Q  26 caccacacagatgcatatgcaatgcatgatcatgaaaatg 65  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  48653547 caccacacagatgcatatgttatgcatgatcatgaaaatg 48653586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 11036096 - 11036138
Alignment:
Q  26 caccacacagatgcatatgc-aatgcatgatcatgaaaatgaa 67  Q
    ||||||| |||||||||||| ||||||||||||||||||||||    
T  11036096 caccacagagatgcatatgctaatgcatgatcatgaaaatgaa 11036138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 82 - 171
Target Start/End: Original strand, 12911491 - 12911580
Alignment:
Q  82 aacccgccactgaagcaccacacagaatgtaattgcaacccgccactaaggcaccaccaataattataagtttaacccgccactaaggca 171  Q
    ||||||||||| | | |||||||||||| |||||  ||||||||||| ||||||||| || || ||| |  |||||| | ||||||||||    
T  12911491 aacccgccactaaggtaccacacagaatataattataacccgccacttaggcaccactaagaaatatgatattaacctgtcactaaggca 12911580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 134
Target Start/End: Original strand, 49170116 - 49170153
Alignment:
Q  97 caccacacagaatgtaattgcaacccgccactaaggca 134  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  49170116 caccacacagaatataattacaacccgccactaaggca 49170153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 21491197 - 21491233
Alignment:
Q  26 caccacacagatgcatatgc-aatgcatgatcatgaa 61  Q
    |||||||||||||||||||| ||||||||||||||||    
T  21491197 caccacacagatgcatatgctaatgcatgatcatgaa 21491233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 122 - 189
Target Start/End: Original strand, 13773185 - 13773252
Alignment:
Q  122 cgccactaaggcaccaccaataattataagtttaacccgccactaaggcacacgaaaaatgcatatgt 189  Q
    ||||||| ||||||||| || |||||||||||||||||||||||||||||||| |||||||| |||||    
T  13773185 cgccacttaggcaccacaaagaattataagtttaacccgccactaaggcacaccaaaaatgcttatgt 13773252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 10751310 - 10751349
Alignment:
Q  26 caccacacagatgcatatgcaatgcatgatcatgaaaatg 65  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  10751310 caccacacagatgcatatgccatgcatgatcatgaaaatg 10751349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 23260364 - 23260403
Alignment:
Q  26 caccacacagatgcatatgcaatgcatgatcatgaaaatg 65  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  23260364 caccacacagatgcatatgccatgcatgatcatgaaaatg 23260403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 32449967 - 32450009
Alignment:
Q  26 caccacacagatgcatatgc-aatgcatgatcatgaaaatgaa 67  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  32449967 caccacacagatgcatatgctaatgcatgatcatgaaaatgaa 32450009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 13773133 - 13773172
Alignment:
Q  26 caccacacagatgcatatgcaatgcatgatcatgaaaatg 65  Q
    ||||||||||||| |||||| |||||||||||||||||||    
T  13773133 caccacacagatgtatatgctatgcatgatcatgaaaatg 13773172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 189
Target Start/End: Complemental strand, 25921894 - 25921825
Alignment:
Q  120 cccgccactaaggcaccaccaataattataagtttaacccgccactaaggcacacgaaaaatgcatatgt 189  Q
    |||| |||| ||||||||| || ||||||||||||||||| |||||||||||||| ||||||||||||||    
T  25921894 cccgtcacttaggcaccacaaagaattataagtttaacccaccactaaggcacaccaaaaatgcatatgt 25921825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 26 - 138
Target Start/End: Complemental strand, 6836432 - 6836326
Alignment:
Q  26 caccacacagatgcatatgcaatgcatgatcatgaaaatgaatgcaatatgatattaacccgccactgaagcaccacacagaatgtaattgcaacccgcc 125  Q
    |||||||||||||||||||| ||||||||||| |||||| ||||| | ||||||||||||||||||| |  ||||||     || |||| | ||||||||    
T  6836432 caccacacagatgcatatgccatgcatgatcaggaaaataaatgc-acatgatattaacccgccactaagacaccac-----atataatcgtaacccgcc 6836339  T
Q  126 actaaggcaccac 138  Q
    |||||||||||||    
T  6836338 actaaggcaccac 6836326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 18472711 - 18472757
Alignment:
Q  143 aattataagtttaacccgccactaaggcacacgaaaaatgcatatgt 189  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||    
T  18472711 aattataagtttaacccgccactaaggcacacaaaaaatgcttatgt 18472757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 18472638 - 18472677
Alignment:
Q  26 caccacacagatgcatatgcaatgcatgatcatgaaaatg 65  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  18472638 caccacacagatgcatatgctatgcatgatcatgaaaatg 18472677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 43407117 - 43407156
Alignment:
Q  26 caccacacagatgcatatgcaatgcatgatcatgaaaatg 65  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  43407117 caccacacagatgcatatgccatgcatgatcatgaaaatg 43407156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 35761754 - 35761796
Alignment:
Q  26 caccacacagatgcatatgc-aatgcatgatcatgaaaatgaa 67  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  35761754 caccacacagatgcatatgctaatgcatgatcatgaaaatgaa 35761796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 65
Target Start/End: Complemental strand, 338564 - 338525
Alignment:
Q  26 caccacacagatgcatatgcaatgcatgatcatgaaaatg 65  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  338564 caccacacagatgcatatgacatgcatgatcatgaaaatg 338525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 65
Target Start/End: Complemental strand, 8422018 - 8421979
Alignment:
Q  26 caccacacagatgcatatgcaatgcatgatcatgaaaatg 65  Q
    ||||||| |||||||||||| |||||||||||||||||||    
T  8422018 caccacatagatgcatatgccatgcatgatcatgaaaatg 8421979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 9537141 - 9537180
Alignment:
Q  26 caccacacagatgcatatgcaatgcatgatcatgaaaatg 65  Q
    ||||||||| |||||||||| |||||||||||||||||||    
T  9537141 caccacacaaatgcatatgccatgcatgatcatgaaaatg 9537180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 65
Target Start/End: Complemental strand, 16075198 - 16075159
Alignment:
Q  26 caccacacagatgcatatgcaatgcatgatcatgaaaatg 65  Q
    |||||||||||||||| ||| |||||||||||||||||||    
T  16075198 caccacacagatgcatttgccatgcatgatcatgaaaatg 16075159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 33007401 - 33007440
Alignment:
Q  26 caccacacagatgcatatgcaatgcatgatcatgaaaatg 65  Q
    |||||||||||||||||||| ||||||||| |||||||||    
T  33007401 caccacacagatgcatatgctatgcatgattatgaaaatg 33007440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 37666928 - 37666967
Alignment:
Q  26 caccacacagatgcatatgcaatgcatgatcatgaaaatg 65  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  37666928 caccacacagatgcatatgacatgcatgatcatgaaaatg 37666967  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 135
Target Start/End: Complemental strand, 6836347 - 6836293
Alignment:
Q  81 taacccgccactgaagcaccacacagaatgtaattgcaacccgccactaaggcac 135  Q
    |||||||||||| | |||||||||||||| |||| | ||||||||||| ||||||    
T  6836347 taacccgccactaaggcaccacacagaatataatagtaacccgccacttaggcac 6836293  T

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Target: scaffold0013 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 138
Target Start/End: Original strand, 242745 - 242862
Alignment:
Q  26 caccacacagatgcatatgcaatgcatgatcatgaaaatgaatgcaat----atgatattaacccgccactgaagcaccacacagaatgtaattgcaa-c 120  Q
    ||||||||| |||||||||| ||||| |||||||||||| ||||||||    |||||| ||||||  |||  | |||||||||| ||| |||||| || |    
T  242745 caccacacatatgcatatgctatgcaagatcatgaaaataaatgcaatatgcatgatagtaacccatcaccaaggcaccacacataatataattggaatc 242844  T
Q  121 ccgccactaaggcaccac 138  Q
    ||||||| ||||||||||    
T  242845 ccgccacgaaggcaccac 242862  T

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Target: scaffold1838 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 590 - 542
Alignment:
Q  86 cgccactgaagcaccacacagaatgtaattgcaacccgccactaaggca 134  Q
    ||||||| | |||||||||||||| |||||  |||||||||||||||||    
T  590 cgccactaaggcaccacacagaatataattataacccgccactaaggca 542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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