View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3090_low_8 (Length: 598)
Name: NF3090_low_8
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 59 - 305
Target Start/End: Complemental strand, 27646929 - 27646684
Alignment:
| Q |
59 |
gaaaattagcttggtaatctctaaatataccaccacaagatgcgggaccatgactaccatcagcaatgccataatgttacacttaatccagaggtaaact |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27646929 |
gaaaattagcttggtaatctctaaatataccaccacaagatgcgggaccatgactaccatgagcaatgccataatgttacacttaatccagaggtaaacc |
27646830 |
T |
|
| Q |
159 |
ggagggagccacatcatctctttgatcttaggaacattaggaggatggatcttaacatagaaagattcaaggatcataaataaaaaatgcttagaagaag |
258 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
27646829 |
ggagggagccacatcatatctttgatcttaggaacattaggaggatggatcttaacatagaaagattcaaggatcataaatcaaaaatgc-tagaagaag |
27646731 |
T |
|
| Q |
259 |
caacaatattagcgtaattaccactcaaagaaacatttgaaatgata |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
27646730 |
caacaatattagcgtaattaccactcaaagatacatttgaaatgata |
27646684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 27647182 - 27647119
Alignment:
| Q |
4 |
taatagccaccaacaataaccatgacaatacataaggtgttnnnnnnncaaccaagaaaattag |
67 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27647182 |
taatagccaccaacaataaccatgacaatacataaggtgttaaaaaaacaaccaagaaaattag |
27647119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 168 - 377
Target Start/End: Complemental strand, 34799254 - 34799045
Alignment:
| Q |
168 |
cacatcatctctttgatcttaggaacattaggaggatggatcttaacatagaaagattcaaggatcataaa-taaaaaatgcttagaagaagcaacaata |
266 |
Q |
| |
|
|||||||||||||| |||| |||| ||||||||||||| ||||||||| ||||||||| |||||||||||| | | | ||||| || |||||||||||| |
|
|
| T |
34799254 |
cacatcatctcttttatctcaggagcattaggaggatgaatcttaacaaagaaagatttaaggatcataaaatcagacatgct-agtggaagcaacaata |
34799156 |
T |
|
| Q |
267 |
ttagcgtaattaccactcaaagaaacatttgaaatgataacattggtcgaagtcttgcaaggaattagattagcctgaaacctccacatgtttctacaat |
366 |
Q |
| |
|
||| ||||||| |||| || |||||| ||||||||||| |||| | |||||||| |||||||| ||||| |||| ||||| ||||||||||||| | |
|
|
| T |
34799155 |
gtagtgtaattaacactaaaggaaacacttgaaatgatagtattgatggaagtcttacaaggaatacgattatcctggaacctgcacatgtttctacggt |
34799056 |
T |
|
| Q |
367 |
gccaaatagca |
377 |
Q |
| |
|
|||||||||| |
|
|
| T |
34799055 |
cccaaatagca |
34799045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 174
Target Start/End: Complemental strand, 21187006 - 21186891
Alignment:
| Q |
60 |
aaaattagcttggtaatctctaaatataccaccacaagatgcgggaccatgactaccatcagcaatgccat-aatgttacacttaatccagaggtaaact |
158 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| | || || |||| | ||||||||| | ||| | || | ||||| ||||||| |||| || ||| |
|
|
| T |
21187006 |
aaaattagcttggtaatctctaaaaataccaccataggaagctggactaagactaccattaacaacacaatcagtgttatacttaattcagatgtgaacc |
21186907 |
T |
|
| Q |
159 |
ggagggagccacatca |
174 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
21186906 |
gaagggagccacatca |
21186891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University