View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_low_82 (Length: 201)
Name: NF3090_low_82
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_low_82 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 3e-93; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 6070777 - 6070589
Alignment:
| Q |
13 |
catcatcacgggaactaacaatcttttgctttaaatagttatattgaatatatattttggctttctcataaatataaaaatgatttgaaataagattaaa |
112 |
Q |
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| T |
6070777 |
catcgtcacgggaactaacaatcttttgatttaaatagtgatattgaatatatattttggctttctcataaatataaaaatgatttgaaataagattaaa |
6070678 |
T |
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| Q |
113 |
taattaatttcagggagaaataatcctacaagaagaaattggtctgagctagttggtgtgacagcagaagaagcagagaggaaaataaa |
201 |
Q |
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| T |
6070677 |
taattaatttcagggagaaataatccaacaagaagaaattggtctgagctagttggtgtgacagcagaagaagcagagaggaaaataaa |
6070589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 110 - 201
Target Start/End: Original strand, 6055738 - 6055829
Alignment:
| Q |
110 |
aaataattaatttcagggagaaataatcctacaagaagaaattggtctgagctagttggtgtgacagcagaagaagcagagaggaaaataaa |
201 |
Q |
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| T |
6055738 |
aaataattaatttcagggagaaataatccaacaagaagaaattggtctgagctagttggtgtgacagcagaagaagcagagaggaaaataaa |
6055829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 124 - 201
Target Start/End: Complemental strand, 6085742 - 6085665
Alignment:
| Q |
124 |
agggagaaataatcctacaagaagaaattggtctgagctagttggtgtgacagcagaagaagcagagaggaaaataaa |
201 |
Q |
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| T |
6085742 |
agggacaaataaccctacaaaaacaagttggcctgagctagttggtgtcactgcagaagaagcagagagaaaaataaa |
6085665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 6055693 - 6055740
Alignment:
| Q |
44 |
taaatagttatattgaatatatattttggctttctcataaatataaaa |
91 |
Q |
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| T |
6055693 |
taaatagtgatattgaacatatattttggctttctcattaatataaaa |
6055740 |
T |
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