View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3090_low_9 (Length: 561)
Name: NF3090_low_9
Description: NF3090
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3090_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 18 - 532
Target Start/End: Original strand, 2489741 - 2490255
Alignment:
| Q |
18 |
gtatccatgtctaccatcacttctaaatggtttggtgaagacgagaagaatgtccgagctttattcacactggcagccaaggtctccccaactattatat |
117 |
Q |
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| T |
2489741 |
gtatccatgtctaccatcacttctaaatggtttggtgaagacgagaagaatgtccgagctttattcacactggcagccaaggtctccccaactattatat |
2489840 |
T |
|
| Q |
118 |
ttgtcgatgaggttgacagtatgcttgggcagcgaacaagagttggggaacatgaagccatgcggaaaataaagaatgaattcatgtccaattgggatgg |
217 |
Q |
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| T |
2489841 |
ttgtcgatgaggttgacagtatgcttgggcagcgaacaagagttggggaacatgaagccatgcggaaaataaagaatgaattcatgtccaattgggatgg |
2489940 |
T |
|
| Q |
218 |
acttacctcgaaatcagaggatcgtattcttgtcctcgctgcaaccaataggccctttgacttggatgaagcaattattagacgatttgaaagaaggtac |
317 |
Q |
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| T |
2489941 |
acttacctcgaaatcagaggatcgtattcttgtcctcgctgcaaccaataggccctttgacttggatgaagcaattattagacgatttgaaagaaggtac |
2490040 |
T |
|
| Q |
318 |
ctctactagttctacatgtacaatgaattttttgtgctctttcttagtacctgaagagtgctagcaatacactttgtaccatacttttcaacacaatctt |
417 |
Q |
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| T |
2490041 |
ctctactagttcgacatgtacaatgaattttttgtgctctttcttagtacctgaagagtgctagcaatacactttgtaccatacttttcaacacaatctt |
2490140 |
T |
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| Q |
418 |
tgctattagttcaaattcatgtggacctgttttcaaaacccgttagtttttcaatcaatgatataggttatgttgagaaagagtgtctaatagtgtgtac |
517 |
Q |
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| T |
2490141 |
tgctattagttcaaattcatgtggacctgttttcaaaacccattagtttttcaatcaatgatataggttatgttgagaaagagtgtctaatagtgtgtac |
2490240 |
T |
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| Q |
518 |
tgttagcattcatac |
532 |
Q |
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| T |
2490241 |
tgttagcattcatac |
2490255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 163; Significance: 9e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 21 - 315
Target Start/End: Complemental strand, 41591242 - 41590948
Alignment:
| Q |
21 |
tccatgtctaccatcacttctaaatggtttggtgaagacgagaagaatgtccgagctttattcacactggcagccaaggtctccccaactattatatttg |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||| ||| |||| |||||||||||||||||||||| |
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| T |
41591242 |
tccatgtctaccatcacttctaaatggtttggtgaagatgagaagaatgttcgcgctttattcacacttgcatccaaagtctccccaactattatatttg |
41591143 |
T |
|
| Q |
121 |
tcgatgaggttgacagtatgcttgggcagcgaacaagagttggggaacatgaagccatgcggaaaataaagaatgaattcatgtccaattgggatggact |
220 |
Q |
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| T |
41591142 |
tcgatgaggttgatagcatgcttgggcaacgaacaagagttggggagcatgaagccatgcggaaaataaagaatgaatttatgtcccattgggacgggct |
41591043 |
T |
|
| Q |
221 |
tacctcgaaatcagaggatcgtattcttgtcctcgctgcaaccaataggccctttgacttggatgaagcaattattagacgatttgaaagaaggt |
315 |
Q |
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| T |
41591042 |
cacgacaaaacaaggagagcgcatccttgttcttgcagcaaccaataggccatttgacttggatgaagctattataaggcgatttgaaaggaggt |
41590948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 24 - 220
Target Start/End: Complemental strand, 11094638 - 11094442
Alignment:
| Q |
24 |
atgtctaccatcacttctaaatggtttggtgaagacgagaagaatgtccgagctttattcacactggcagccaaggtctccccaactattatatttgtcg |
123 |
Q |
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||||| || |||||||| |||||||| || ||||| || ||||||||||||||||| ||||| || ||||| ||||| | || ||||||||||| |||| |
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| T |
11094638 |
atgtccacgatcacttcaaaatggttcggagaagatgaaaagaatgtccgagctttgttcacgctagcagctaaggttgctccgactattatattcgtcg |
11094539 |
T |
|
| Q |
124 |
atgaggttgacagtatgcttgggcagcgaacaagagttggggaacatgaagccatgcggaaaataaagaatgaattcatgtccaattgggatggact |
220 |
Q |
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|||| |||||||| ||||| || ||||| || ||||| || |||||||| |||||| |||| || || |||||||||||| | ||||||||||||| |
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| T |
11094538 |
atgaagttgacagcatgctcggtcagcgtactagagtcggagaacatgaggccatgaggaagattaaaaatgaattcatgacacattgggatggact |
11094442 |
T |
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