View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3091_high_1 (Length: 599)
Name: NF3091_high_1
Description: NF3091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3091_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 21180286 - 21179908
Alignment:
| Q |
1 |
tagacgccaacatgaatcctaaaatatcagactttggaatggcgagaatatttggcgagaatgttcttcaagcaaatacaaatcgcatagttggaactta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
21180286 |
tagacgccaacatgaatcctaaaatatcagactttggaatggcgagaatatttggtgagaatgttcttcaggcaaatacaaatcgcatagttggaactta |
21180187 |
T |
|
| Q |
101 |
gtaagtaatataaagtaatatattcttgccttcatttgcaatgaaaatttgcttcaaaattttatatcaaataagaactctttaatgatggtttttcagt |
200 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
21180186 |
gtaagtaatataaactaatat--tcttgccttcatttgcaatgaaaatttgcttcaaaattttatatcaactaagaactctttaatgatggtttttcagt |
21180089 |
T |
|
| Q |
201 |
ggctacatgtccccagaatatgctatggaaggcgtttactcgattaaatctgacgtgtttagctttggagtccttttgttagagattataagcggaaaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21180088 |
ggctacatgtccccagaatatgctatggaaggcgtttattcgattaaatctgacgtgtttagctttggagtccttttgttagagattataagcggaaaga |
21179989 |
T |
|
| Q |
301 |
agaatactggtttttatcaaacaaattccttcaatcttcttggatatgtaagttcctaatttcaactcaacttatcttaat |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
21179988 |
agaatactggtttttatcaaacaaattccttcaatcttcttggatatgtaagttcctaaattcaactcaacttatcttaat |
21179908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 429 - 587
Target Start/End: Complemental strand, 21179838 - 21179680
Alignment:
| Q |
429 |
tattcaaggcttgggatctatggaccaacaattctggaatggacttgattgattcaaaactggatgatatctccaacaagcatttagtaccaaaatacgt |
528 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21179838 |
tattcaaggcttgggatctatggaccaacaattctggaatggacttgattgattcaaaactggatgatatctccaacaagcatttagtaccaaaatacgt |
21179739 |
T |
|
| Q |
529 |
gaatattggacttctatgtgttcaacaaagtccagaagatagaccaaccatgtctgatg |
587 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21179738 |
gaatattggacttctatgtgttcaacaaagtccagaagatagaccaaccatgtctgatg |
21179680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 402 - 587
Target Start/End: Original strand, 23190162 - 23190347
Alignment:
| Q |
402 |
ataattttgggttctttacttgctgaatattcaaggcttgggatctatggaccaacaattctggaatggacttgattgattcaaaactggatgatatctc |
501 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||||||||||| |||| ||| ||||||||||||| | ||||| ||| || ||||||||||||| |
|
|
| T |
23190162 |
ataattttgggttctttacttgttgaatactcaaggcttgggatctttggaacaatgattctggaatggagctaattgactcagaattggatgatatctc |
23190261 |
T |
|
| Q |
502 |
caacaagcatttagtaccaaaatacgtgaatattggacttctatgtgttcaacaaagtccagaagatagaccaaccatgtctgatg |
587 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
23190262 |
caacaagcatttagtaccaagatacgtgaatatcggacttctctgtgttcaacaaagtccggaagataggccaaccatgtctgatg |
23190347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 402 - 587
Target Start/End: Original strand, 23182786 - 23182971
Alignment:
| Q |
402 |
ataattttgggttctttacttgctgaatattcaaggcttgggatctatggaccaacaattctggaatggacttgattgattcaaaactggatgatatctc |
501 |
Q |
| |
|
|||||||||||||||||||||| ||| || |||||||||||||||| ||||||||| ||||||||||||| | ||||||||| || |||||||||| || |
|
|
| T |
23182786 |
ataattttgggttctttacttgttgattactcaaggcttgggatctttggaccaacgattctggaatggagctaattgattcagaattggatgatatatc |
23182885 |
T |
|
| Q |
502 |
caacaagcatttagtaccaaaatacgtgaatattggacttctatgtgttcaacaaagtccagaagatagaccaaccatgtctgatg |
587 |
Q |
| |
|
||||||||||||||||| || |||||||||||| |||||||| ||||||||||||||||| || ||||| |||||||||||||||| |
|
|
| T |
23182886 |
caacaagcatttagtactaagatacgtgaatatcggacttctctgtgttcaacaaagtccggatgataggccaaccatgtctgatg |
23182971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 170 - 364
Target Start/End: Original strand, 23182482 - 23182675
Alignment:
| Q |
170 |
aataagaactctttaatgatggtttttcagtggctacatgtccccagaatatgctatggaaggcgtttactcgattaaatctgacgtgtttagctttgga |
269 |
Q |
| |
|
||||| ||||||||| | |||||||| |||||||||||||| || |||||||||||||||||| ||| ||| ||||||| ||||| || ||||||||| |
|
|
| T |
23182482 |
aataataactctttattcttggttttt-agtggctacatgtctcctgaatatgctatggaaggccttttctcagttaaatccgacgtcttcagctttgga |
23182580 |
T |
|
| Q |
270 |
gtccttttgttagagattataagcggaaagaagaatactggtttttatcaaacaaattccttcaatcttcttggatatgtaagttcctaatttca |
364 |
Q |
| |
|
|| |||||||||||||||||||| || |||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||| |||| |
|
|
| T |
23182581 |
gtgcttttgttagagattataagtggcaagaagaatactggtttttatcaaacaagctctttcaatcttcttggatatgtaagtacctaaattca |
23182675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 170 - 364
Target Start/End: Original strand, 23189859 - 23190052
Alignment:
| Q |
170 |
aataagaactctttaatgatggtttttcagtggctacatgtccccagaatatgctatggaaggcgtttactcgattaaatctgacgtgtttagctttgga |
269 |
Q |
| |
|
||||| ||||||||| | |||||||| |||||||||||||| || |||||||||||||||||| ||| ||| ||||||| ||||| |||||||||||| |
|
|
| T |
23189859 |
aataataactctttattcttggttttt-agtggctacatgtctcctgaatatgctatggaaggccttttctcagttaaatccgacgtctttagctttgga |
23189957 |
T |
|
| Q |
270 |
gtccttttgttagagattataagcggaaagaagaatactggtttttatcaaacaaattccttcaatcttcttggatatgtaagttcctaatttca |
364 |
Q |
| |
|
|| ||| |||||||||||||||| || |||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||| |||| |
|
|
| T |
23189958 |
gttcttctgttagagattataagtggcaagaagaatactggtttttatcaaacaagctctttcaatcttcttggatatgtaagtacctaaattca |
23190052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 23182298 - 23182404
Alignment:
| Q |
1 |
tagacgccaacatgaatcctaaaatatcagactttggaatggcgagaatatttggcgagaatgttcttcaagcaaatacaaatcgcatagttggaactta |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||| || |||||||| ||||||| |||||||||||||||||||| || ||||||||||| |
|
|
| T |
23182298 |
tagacgccaacatgaatcctaaaatttcagattttggaatggctaggatatttggtgagaatgagcttcaagcaaatacaaatcggattgttggaactta |
23182397 |
T |
|
| Q |
101 |
gtaagta |
107 |
Q |
| |
|
||||||| |
|
|
| T |
23182398 |
gtaagta |
23182404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 23189675 - 23189781
Alignment:
| Q |
1 |
tagacgccaacatgaatcctaaaatatcagactttggaatggcgagaatatttggcgagaatgttcttcaagcaaatacaaatcgcatagttggaactta |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||||||| || |||||||| ||||||| |||||||||||||||||||| || ||||||||||| |
|
|
| T |
23189675 |
tagacaccaacatgaatcctaaaatatcagattttggaatggctaggatatttggtgagaatgagcttcaagcaaatacaaatcggattgttggaactta |
23189774 |
T |
|
| Q |
101 |
gtaagta |
107 |
Q |
| |
|
||||||| |
|
|
| T |
23189775 |
gtaagta |
23189781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 2682077 - 2682024
Alignment:
| Q |
3 |
gacgccaacatgaatcctaaaatatcagactttggaatggcgagaatatttggc |
56 |
Q |
| |
|
|||| ||| |||||||| ||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
2682077 |
gacggcaaaatgaatccaaaaatatcagactttgggatggctagaatatttggc |
2682024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University