View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3091_high_4 (Length: 346)
Name: NF3091_high_4
Description: NF3091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3091_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 10 - 327
Target Start/End: Original strand, 21180286 - 21180603
Alignment:
| Q |
10 |
aacaatatgttgctagcttttaaatctcggtgaatgattcggaatctggaatattgatgcagataaagaagtccttgtgcaatcccgtcaattattcgaa |
109 |
Q |
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| T |
21180286 |
aacaatatgttgctagcttttaaatctcggtgaatgattcggaatctggaatattgatgcagataaaggagtccttgtgcaatcccgtcaattattcgaa |
21180385 |
T |
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| Q |
110 |
cccgtgtttcccaatctagcatccttctttttactgcatctgttttgaacaaaaagatatcacaactacagtttgagttaaatagaatggagatttttgt |
209 |
Q |
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| T |
21180386 |
cccgtgtttcccaatctagcatccttctttttactgcatctgttttgaacaaaaagatatcacaactacagtttgagttaaatagaatggagatttttgt |
21180485 |
T |
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| Q |
210 |
ctctgaaaagtacagaccnnnnnnnnnnnnntccaagcttttattgggcatgaattcataaataagcattttttcatcccgctcaatgcagcagccgaga |
309 |
Q |
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| T |
21180486 |
ctctgaaaagtacagaccaaaaataaaaaaatccaagcttttattgggcatgaattcataaataagcattttttcatcccgctcaatgcagcagccgaga |
21180585 |
T |
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| Q |
310 |
agtctaacaagattattg |
327 |
Q |
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| T |
21180586 |
agtctaacaagattattg |
21180603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 5 - 176
Target Start/End: Complemental strand, 23189680 - 23189509
Alignment:
| Q |
5 |
tgtcgaacaatatgttgctagcttttaaatctcggtgaatgattcggaatctggaatattgatgcagataaagaagtccttgtgcaatcccgtcaattat |
104 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||| || || || |||||||| |
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| T |
23189680 |
tgtctaacaatatgttgctagcttttaaatctcgatgaatgatccggaacctagaatattgatgcagataaagaagtccttgggcgatgccttcaattat |
23189581 |
T |
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| Q |
105 |
tcgaacccgtgtttcccaatctagcatccttctttttactgcatctgttttgaacaaaaagatatcacaact |
176 |
Q |
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| T |
23189580 |
tcgaacccgtgttccccaatctagcatccttctttttattgcatctgttttgaacaaaaagatgtcacaact |
23189509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 10 - 177
Target Start/End: Complemental strand, 23182298 - 23182131
Alignment:
| Q |
10 |
aacaatatgttgctagcttttaaatctcggtgaatgattcggaatctggaatattgatgcagataaagaagtccttgtgcaatcccgtcaattattcgaa |
109 |
Q |
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||||||||||| ||||||||||||||||| |||||||| ||||| || |||||||||||||||||||| |||||||| ||||| || ||||||||||||| |
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| T |
23182298 |
aacaatatgttactagcttttaaatctcgatgaatgatccggaacctcgaatattgatgcagataaagtagtccttgggcaattccttcaattattcgaa |
23182199 |
T |
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| Q |
110 |
cccgtgtttcccaatctagcatccttctttttactgcatctgttttgaacaaaaagatatcacaacta |
177 |
Q |
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| T |
23182198 |
cccgtgatccccaatctagcatccttctttttacagcttctgttttgcaccaaaagatgtcacaacta |
23182131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 241 - 326
Target Start/End: Complemental strand, 23182052 - 23181967
Alignment:
| Q |
241 |
tccaagcttttattgggcatgaattcataaataagcattttttcatcccgctcaatgcagcagccgagaagtctaacaagattatt |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||| |
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| T |
23182052 |
tccaagcttttattgggcatgaattcataaataagcattttttcatctcgatcaatgcaacagccgagaagtctaacaagattatt |
23181967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 241 - 326
Target Start/End: Complemental strand, 23189429 - 23189344
Alignment:
| Q |
241 |
tccaagcttttattgggcatgaattcataaataagcattttttcatcccgctcaatgcagcagccgagaagtctaacaagattatt |
326 |
Q |
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| T |
23189429 |
tccaagcttttattgggcatgaattcatagataagcattttttcatctcgctcaatgcaacagccgagaagtctaacaagattatt |
23189344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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