View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3091_low_10 (Length: 237)
Name: NF3091_low_10
Description: NF3091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3091_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 3675953 - 3676174
Alignment:
| Q |
1 |
ccagcaaaagaaactgaaagatcttcaatagcttgacttgaacttgaattgcttatatctgataaacatagtctttgcaaagaaccttgttttagaacat |
100 |
Q |
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| T |
3675953 |
ccagcaaaagaaactgaaagatcttcaatagcttgacttgaacttgaattgcttatatctgataaacatagtctttgcaaagaaccttgttttagaacat |
3676052 |
T |
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| Q |
101 |
gtttctctgattcctccaaagggtatttactcttgtaacaatttaggatcaagatcatagacttccatgttatctttttagtagtagtcatctagaattt |
200 |
Q |
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| T |
3676053 |
gtttctctgattcctccaaagggtatttactcttgtaacaatttaggatcaagatcatagacttccatgttatctttttagtagtagtcatctagaattt |
3676152 |
T |
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| Q |
201 |
gtatagtgtatgtgcaataact |
222 |
Q |
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| T |
3676153 |
gtatagtgtatgtgcaataact |
3676174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 181
Target Start/End: Complemental strand, 48552759 - 48552628
Alignment:
| Q |
50 |
tgcttatatctgataaacatagtctttgcaaagaaccttgttttagaacatgtttctctgattcctccaaagggtatttactcttgtaacaatttaggat |
149 |
Q |
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| T |
48552759 |
tgcttatatcagataagcttaccctttggaaagaaccttgttttaaaacctttttttctggttcttctaatgagtattttgtcttgtaacaacctaagat |
48552660 |
T |
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| Q |
150 |
caagatcatagacttccatgttatctttttag |
181 |
Q |
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| T |
48552659 |
caagacaatagacttccatgtaatctttttag |
48552628 |
T |
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