View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3091_low_11 (Length: 206)
Name: NF3091_low_11
Description: NF3091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3091_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 125; Significance: 1e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 9 - 187
Target Start/End: Complemental strand, 52528501 - 52528318
Alignment:
| Q |
9 |
gagaagaagggaggagggtgagttgagaaatggaggcaggcaggcaggtaacaagatccccttgcaaaactaaattcaaggtataccctctacacagact |
108 |
Q |
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| T |
52528501 |
gagaagaagggaggagggtgagttgagaaatggaggcaggcagg----taacaagatccccttgcaaa-ctaaattcaaggtataccctctacacagact |
52528407 |
T |
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| Q |
109 |
tgccacttagatatttcttatctaattattatttccttt----------tcttaaatatattttccgtccatacaaaatttaaatcttc |
187 |
Q |
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| T |
52528406 |
ttccacttagatatttcttatctaattattatttccttttcttttcttttcttaaatatattttccgtccatacaaaatttaaatcttc |
52528318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 9 - 187
Target Start/End: Complemental strand, 52530823 - 52530640
Alignment:
| Q |
9 |
gagaagaagggaggagggtgagttgagaaatggaggcaggcaggcaggtaacaagatccccttgcaaaactaaattcaaggtataccctctacacagact |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
52530823 |
gagaagaagggaggagggtgagttgagaaatggaggcaggcagg----taacaagatccccttgcaaa-ctaaattcaaggtataccctctacacagact |
52530729 |
T |
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| Q |
109 |
tgccacttagatatttcttatctaattattatttccttt----------tcttaaatatattttccgtccatacaaaatttaaatcttc |
187 |
Q |
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| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
52530728 |
ttccacttagatatttcttatctaattattatttccttttcttttcttttcttaaatatattttccgtccatacaaaatttaaatcttc |
52530640 |
T |
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