View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3091_low_2 (Length: 409)
Name: NF3091_low_2
Description: NF3091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3091_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 11 - 403
Target Start/End: Original strand, 27730297 - 27730689
Alignment:
| Q |
11 |
aatgaagataggaattttttaatttgtgtcccccatgttacacattcagcatcataatttttcctaatatgattgaaaacatgatgaataacatagtgaa |
110 |
Q |
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| T |
27730297 |
aatgaagataggaattttttaatttgtctcccccatgttacacattcagcatcagaatttttcttagtatgattgaaaacatgatgaataacatattgaa |
27730396 |
T |
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| Q |
111 |
tttcatttcctctcaatcaattaggatatgctacatctgcaaacctagaaggagtagaggtaattgaacttgtgaatgtgaaatctgtttgaccaaatga |
210 |
Q |
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| T |
27730397 |
tttcatttcctctcaatcaattaggatatgctacatctacaaacctagaaggagtagaggtaattgaacttgtgaatgtgaaatctgtttgaccaaatga |
27730496 |
T |
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| Q |
211 |
acttttacaataggcgatagctgcttgaatggaattgtcttttgaaaatccatcatgaattggtgagttatcacatgaagctgaagcagtttttcttctt |
310 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
27730497 |
acttttacaataggcaatagctgcttgaatggaattgtcttttgaaaatccatcatgaattggtgagttgtcacatgaagttgaagcagtttttcttctt |
27730596 |
T |
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| Q |
311 |
tttgatctgctaaatacacctctcaatgctcccaaatccatctccattaactttttactctttctcaaagaggcacacatgctatcatcctcc |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
27730597 |
tttgatctgctaaatacacctctcaatgctcccaaatccatctccattaactttttactctttctcaaagaggcagacatgctatcatcctcc |
27730689 |
T |
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