View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3091_low_3 (Length: 346)
Name: NF3091_low_3
Description: NF3091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3091_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 179 - 335
Target Start/End: Original strand, 41180968 - 41181124
Alignment:
| Q |
179 |
gttcgcgaaaaatgtggaaacccttaattatttttcattgcaatcagacggcaatgcagtggccattgctcatttgacattgtacttaggttatacggtt |
278 |
Q |
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| T |
41180968 |
gttcacgaaaaatgtgggaacccttaattatttttcattgcaatcaaacggcaatgcagtggccactgctcatttgacattgtacttaggttatacggtt |
41181067 |
T |
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| Q |
279 |
tgttgctttttgacaacaacctagccttcataatattgcatattcgattcatctcat |
335 |
Q |
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| T |
41181068 |
tgttgctttttgacaacaacctagccttcatactattgtatattcgattcatgtcat |
41181124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 41180760 - 41180916
Alignment:
| Q |
19 |
ctactttcttacttcctcttcttcttagagatagtgctggtttatctgtttc-----------tagattgatttctgccctc-tttgtttgaggtgcttt |
106 |
Q |
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| T |
41180760 |
ctactttcttacttcctcttcttcatagagatagtgctggtttatccgtttctaaattgattttagattgatttctgccctcttttgtttgaggtgcttt |
41180859 |
T |
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| Q |
107 |
gttcttaannnnnnngcttttggttggtttgtaatgtggtaactgttgtacttgggtt |
164 |
Q |
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| T |
41180860 |
gttctt-atttttctgcttttggttggtttgtaatgtggtaactgttgtacttgggtt |
41180916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 190 - 257
Target Start/End: Complemental strand, 9256492 - 9256425
Alignment:
| Q |
190 |
atgtggaaacccttaattatttttcattgcaatcagacggcaatgcagtggccattgctcatttgaca |
257 |
Q |
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| T |
9256492 |
atgtgggaacccttacttatttttcattgcattcagacggcaatgcagtggcccttgctcatctgaca |
9256425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 170
Target Start/End: Original strand, 43339980 - 43340068
Alignment:
| Q |
81 |
tctgccctctttgtttgaggtgctttgttcttaannnnnnngcttttggttggtttgtaatgtggtaactgttgtacttgggttcaggcc |
170 |
Q |
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| T |
43339980 |
tctgccctctttgtttgaggtgctttgt-ctttgtttctttgcttttggtttgtttgtaatgtgataactgttgtacttggattcaggcc |
43340068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 43339936 - 43339983
Alignment:
| Q |
19 |
ctactttcttacttcctcttcttcttagagatagtgctggtttatctg |
66 |
Q |
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| T |
43339936 |
ctactttcttactttctcttcttcttagggatagtgctggtttatctg |
43339983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 264
Target Start/End: Original strand, 15218145 - 15218219
Alignment:
| Q |
190 |
atgtggaaacccttaattatttttcattgcaatcagacggcaatgcagtggccattgctcatttgacattgtact |
264 |
Q |
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| T |
15218145 |
atgtgggaacccttgcttatttttcactacatccaggcggcaatgcagcggcccttgctcatttgacactgtact |
15218219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 264
Target Start/End: Original strand, 27453028 - 27453102
Alignment:
| Q |
190 |
atgtggaaacccttaattatttttcattgcaatcagacggcaatgcagtggccattgctcatttgacattgtact |
264 |
Q |
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| T |
27453028 |
atgtggaaacccttgcttatttttcactacatccaggcggtgatgcagcggcccttgctcatttgacattgtact |
27453102 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 264
Target Start/End: Original strand, 45329517 - 45329591
Alignment:
| Q |
190 |
atgtggaaacccttaattatttttcattgcaatcagacggcaatgcagtggccattgctcatttgacattgtact |
264 |
Q |
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| T |
45329517 |
atgtgggaacccttgcttatttttcactacatccagacggcgatgcagtggcccttgttcatttgacactgtact |
45329591 |
T |
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