View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3091_low_5 (Length: 333)
Name: NF3091_low_5
Description: NF3091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3091_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 14 - 317
Target Start/End: Complemental strand, 14929139 - 14928836
Alignment:
| Q |
14 |
aagaagatcaagatgattagcacaaataatagcagtaatgatagcccaataaacagcaacaggaatctcttgcatagcttcagacaaagcaggaacatct |
113 |
Q |
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| T |
14929139 |
aagaagatcaagatgattagcacaaataatagcagtaatgatagcccaataaacagcaacaggaatctcttgcatagcttcagacaaagcaggaacatct |
14929040 |
T |
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| Q |
114 |
ttatgttcatacccttttgttgaaagcttttccaactcagtaatacactcaacagcaaacaacagattcttcaccaaactgttgtaatcagcaatggctt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14929039 |
ttatgttcatacccttttgttgaaagcttttccaactcagtaatacactcaacagcaaacaacagattcttcaccaaactgttgtaatcagcaatggctt |
14928940 |
T |
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| Q |
214 |
gtctattcttatcgacactttgaacacggttcattgttgctaatgatcttccaagtgtgtcaccacttggtgtttgaactaggtgccagaaattaccata |
313 |
Q |
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| T |
14928939 |
gtctattcttatcgacactttgaacacggttcattgttgctaatgatcttccaagtgtatcaccacttggtgtttgaactaggtgccagaaatttccata |
14928840 |
T |
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| Q |
314 |
ttcc |
317 |
Q |
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|||| |
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| T |
14928839 |
ttcc |
14928836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 33237348 - 33237295
Alignment:
| Q |
59 |
ccaataaacagcaacaggaatctcttgcatagcttcagacaaagcaggaacatc |
112 |
Q |
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||||||||||||||||||||| ||||||| || |||||||||| ||||||||| |
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| T |
33237348 |
ccaataaacagcaacaggaatatcttgcaatgcatcagacaaagaaggaacatc |
33237295 |
T |
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