View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3091_low_8 (Length: 240)
Name: NF3091_low_8
Description: NF3091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3091_low_8 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 422077 - 422298
Alignment:
| Q |
19 |
aacgttaacaaaggtacttatacaaatcaccgaccaaaaagatcatcacgctaatagccggatttgaggccacggccttgcggataaatatgtaatttaa |
118 |
Q |
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| T |
422077 |
aacgttaacaaaggtacttatacagatcaccgaccaaaaagatcatcacgctaatagccggatttgaggccacggccttgcggataaatatgtaatttaa |
422176 |
T |
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| Q |
119 |
gtaattatgtggatatacttataacataacaaaatatgaaattagtctattttataaaatattatgcatgactaaggctgtgctaacaagtttcaagttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
422177 |
gtaattatgtggatatacttataacataacaaaatatgaaattagtctatcttataaaatattatgcatgactaaggctgtgctaacaagtttcaagttt |
422276 |
T |
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| Q |
219 |
catcaagtcggatggaaaagct |
240 |
Q |
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|||||||| ||||||||||||| |
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| T |
422277 |
catcaagttggatggaaaagct |
422298 |
T |
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