View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3091_low_9 (Length: 238)
Name: NF3091_low_9
Description: NF3091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3091_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 52528219 - 52528063
Alignment:
| Q |
1 |
taattgtaaagattaataattgaatcggtataatcgttatggagtgtcaaagctcccc-acatgatatttaacatttttgcatttttaaagtcggattcg |
99 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||| |||| |||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
52528219 |
taattgtaaagattaatcattgaatcggtgtaatcgttatggagtggcaaaactcccccacatgatatttaacatttttgcattttcaaagtcggattcg |
52528120 |
T |
|
| Q |
100 |
aatttaatacaaggataaattatttgtcatatcattcatgtacagctagaagtgcag |
156 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||| |||| |||| | |||||| |
|
|
| T |
52528119 |
aatttaataccaggataaattatttgtcatctcattcaagtactgctaaatgtgcag |
52528063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 52530541 - 52530385
Alignment:
| Q |
1 |
taattgtaaagattaataattgaatcggtataatcgttatggagtgtcaaagctcccc-acatgatatttaacatttttgcatttttaaagtcggattcg |
99 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||| |||| |||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
52530541 |
taattgtaaagattaatcattgaatcggtgtaatcgttatggagtggcaaaactcccccacatgatatttaacatttttgcattttcaaagtcggattcg |
52530442 |
T |
|
| Q |
100 |
aatttaatacaaggataaattatttgtcatatcattcatgtacagctagaagtgcag |
156 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||| |||| |||| | |||||| |
|
|
| T |
52530441 |
aatttaataccaggataaattatttgtcatctcattcaagtactgctaaatgtgcag |
52530385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University