View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3092_high_11 (Length: 249)
Name: NF3092_high_11
Description: NF3092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3092_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 2686946 - 2687180
Alignment:
| Q |
1 |
aattattgatgtctcaactatggtggcacctaaaaaacaacgatcatttgcaacattctaataaatatcgaacatctatttttattttggaggctggctt |
100 |
Q |
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| T |
2686946 |
aattattgatgtctcaactatgttggcacctaacaaacaacgatcatttgcaacattctaataaatatcgaacatctatttttattttggaggctggctt |
2687045 |
T |
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| Q |
101 |
ggaaagaagatgcttgaatgaatccannnnnnnggatccattgattgaagtggttggaacaggtatctaagttactttaatttaaatttaaatagttagt |
200 |
Q |
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| T |
2687046 |
ggaaagaagatgcttaaatgaatccatttttttggatccattgattgaagtggttggaacaggtatctaagttactttaatttaaatttaaatagttagt |
2687145 |
T |
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| Q |
201 |
ttaaaaaaggaattaagcttttgtgacatgaaatg |
235 |
Q |
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| T |
2687146 |
ttaaaaaaggaattaagcttttgtgacatgaaatg |
2687180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 77 - 174
Target Start/End: Original strand, 2694055 - 2694153
Alignment:
| Q |
77 |
tatttttattttgg-aggctggcttggaaagaagatgcttgaatgaatccannnnnnnggatccattgattgaagtggttggaacaggtatctaagtta |
174 |
Q |
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| T |
2694055 |
tatttttatttttgtaggatggcttggacagaagatgcttaaatgaatccattttcctggatccattgattgaagtggttggaacaggtatctaagtta |
2694153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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