View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3092_high_12 (Length: 223)

Name: NF3092_high_12

Description: NF3092

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF3092_high_12

[»] chr2 (1 HSPs)

[»] chr8 (1 HSPs)

Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 150; E-Value: 2e-79

Query Start/End: Original strand, 57 - 210

Target Start/End: Complemental strand, 43147354 - 43147201

Alignment:

Q	57	tcatttttattactacccattaatcataacaatattacatttacaaaatggatttataatagttgaatcaaatcaaataaaggtatgattttgatactaa	156	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	43147354	tcatttttattactacccattaatcataacaatattaaatttacaaaatggatttataatagttgaatcaaatcaaataaaggtatgattttgatactaa	43147255	T

Q	157	cttaccagagtatttgtaggagttaaggttgtaaagattattgggttctctgct	210	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	43147254	cttaccagagtatttgtaggagttaaggttgtaaagattattgggttctctgct	43147201	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 29; E-Value: 0.0000003

Query Start/End: Original strand, 159 - 195

Target Start/End: Original strand, 5099227 - 5099263

Alignment:

Q	159	taccagagtatttgtaggagttaaggttgtaaagatt	195	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	5099227	taccagagaatttgtaggagttaaggttgtagagatt	5099263	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]