View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3092_high_8 (Length: 263)

Name: NF3092_high_8
Description: NF3092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3092_high_8
NF3092_high_8
[»] chr3 (5 HSPs)
chr3 (59-256)||(5498977-5499174)
chr3 (187-256)||(2550670-2550739)
chr3 (187-256)||(7407279-7407348)
chr3 (187-256)||(13846496-13846565)
chr3 (187-241)||(1655081-1655135)
[»] chr2 (2 HSPs)
chr2 (39-117)||(27149572-27149650)
chr2 (187-256)||(31342257-31342326)
[»] chr7 (2 HSPs)
chr7 (187-241)||(19747730-19747784)
chr7 (187-241)||(4684943-4684997)
[»] scaffold0576 (1 HSPs)
scaffold0576 (187-256)||(7205-7274)
[»] chr8 (3 HSPs)
chr8 (187-256)||(25639313-25639382)
chr8 (187-256)||(45355639-45355708)
chr8 (187-241)||(28248620-28248674)
[»] chr6 (2 HSPs)
chr6 (187-256)||(15362221-15362290)
chr6 (187-256)||(16735310-16735379)
[»] chr4 (1 HSPs)
chr4 (187-256)||(43600771-43600840)
[»] chr5 (2 HSPs)
chr5 (187-241)||(5077354-5077408)
chr5 (187-241)||(7411818-7411872)


Alignment Details
Target: chr3 (Bit Score: 153; Significance: 4e-81; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 59 - 256
Target Start/End: Original strand, 5498977 - 5499174
Alignment:
Q  59 tgaaaatatgcaagattaaaacttaaaggaatctaacgaaacaatcatttatgcataccattcttagnnnnnnngagtaaatatatacaaccaccatacc 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||       |||||||||||||||| |||||||||    
T  5498977 tgaaaatatgcaagattaaaacttaaaggaatctaacgaaacaatcatttaagcataccattcttagaaaaaaagagtaaatatatacaatcaccatacc 5499076  T
Q  159 tttctgatcttcaaaaggtagaaatcaataaggtcatcaagcagcacagtagaaatgcaatccttttctttaatctcctttgtattgcgcctttgctt 256  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||    
T  5499077 tttctgatcttcaaaaggtagaaatcaataatgtcatcaagcagcacaatagaaatgcaatccttttctttaatctcctttgtattgcggcgttgctt 5499174  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 2550670 - 2550739
Alignment:
Q  187 taaggtcatcaagcagcacagtagaaatgcaatccttttctttaatctcctttgtattgcgcctttgctt 256  Q
    |||||||||||||| |||||  |||||||||| |||| ||||||||||||||||| ||| ||| ||||||    
T  2550670 taaggtcatcaagctgcacatgagaaatgcaagccttctctttaatctcctttgtcttgtgccgttgctt 2550739  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 256
Target Start/End: Complemental strand, 7407348 - 7407279
Alignment:
Q  187 taaggtcatcaagcagcacagtagaaatgcaatccttttctttaatctcctttgtattgcgcctttgctt 256  Q
    |||||||||||||| |||||  |||||||||| |||| ||||||||||||||||| ||| ||| ||||||    
T  7407348 taaggtcatcaagctgcacatgagaaatgcaagccttctctttaatctcctttgtcttgtgccgttgctt 7407279  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 13846496 - 13846565
Alignment:
Q  187 taaggtcatcaagcagcacagtagaaatgcaatccttttctttaatctcctttgtattgcgcctttgctt 256  Q
    |||||||||||||| |||||  |||||||||| |||| ||||||||||||||||| ||| ||| ||||||    
T  13846496 taaggtcatcaagctgcacatgagaaatgcaagccttctctttaatctcctttgtcttgtgccgttgctt 13846565  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 241
Target Start/End: Original strand, 1655081 - 1655135
Alignment:
Q  187 taaggtcatcaagcagcacagtagaaatgcaatccttttctttaatctcctttgt 241  Q
    |||||||||||||| |||||  |||||||||| |||| |||||||||||||||||    
T  1655081 taaggtcatcaagctgcacatgagaaatgcaagccttctctttaatctcctttgt 1655135  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 39 - 117
Target Start/End: Complemental strand, 27149650 - 27149572
Alignment:
Q  39 tgtttattcattagcaatgatgaaaatatgcaagattaaaacttaaaggaatctaacgaaacaatcatttatgcatacc 117  Q
    |||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||  ||||||||||||||| |||||    
T  27149650 tgtttattcattcgcaatgatgaaaatatgctagactaaaacttaaaggaatctaataaaacaatcatttatgtatacc 27149572  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 256
Target Start/End: Complemental strand, 31342326 - 31342257
Alignment:
Q  187 taaggtcatcaagcagcacagtagaaatgcaatccttttctttaatctcctttgtattgcgcctttgctt 256  Q
    |||||||||||||| |||||  |||||||||| |||| ||||||||||||||||| ||| ||| ||||||    
T  31342326 taaggtcatcaagctgcacatgagaaatgcaagccttctctttaatctcctttgtcttgtgccgttgctt 31342257  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 241
Target Start/End: Original strand, 19747730 - 19747784
Alignment:
Q  187 taaggtcatcaagcagcacagtagaaatgcaatccttttctttaatctcctttgt 241  Q
    |||||||||||||| ||||| |||||||||||||||| |||||||||||||||||    
T  19747730 taaggtcatcaagctgcacattagaaatgcaatccttctctttaatctcctttgt 19747784  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 241
Target Start/End: Complemental strand, 4684997 - 4684943
Alignment:
Q  187 taaggtcatcaagcagcacagtagaaatgcaatccttttctttaatctcctttgt 241  Q
    |||||||||||||| |||||  |||||||||| |||| |||||||||||||||||    
T  4684997 taaggtcatcaagctgcacatgagaaatgcaagccttctctttaatctcctttgt 4684943  T

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Target: scaffold0576 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 7205 - 7274
Alignment:
Q  187 taaggtcatcaagcagcacagtagaaatgcaatccttttctttaatctcctttgtattgcgcctttgctt 256  Q
    |||||||||||||| |||||  |||||||||| |||| ||||||||||||||||| ||| ||| ||||||    
T  7205 taaggtcatcaagctgcacatgagaaatgcaagccttctctttaatctcctttgtcttgtgccgttgctt 7274  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 25639313 - 25639382
Alignment:
Q  187 taaggtcatcaagcagcacagtagaaatgcaatccttttctttaatctcctttgtattgcgcctttgctt 256  Q
    |||||||||||||| |||||  |||||||||| |||| ||||||||||||||||| ||| ||| ||||||    
T  25639313 taaggtcatcaagctgcacatgagaaatgcaagccttctctttaatctcctttgtcttgtgccgttgctt 25639382  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 256
Target Start/End: Complemental strand, 45355708 - 45355639
Alignment:
Q  187 taaggtcatcaagcagcacagtagaaatgcaatccttttctttaatctcctttgtattgcgcctttgctt 256  Q
    |||||||||||||| |||||  |||||||||| |||| ||||||||||||||||| ||| ||| ||||||    
T  45355708 taaggtcatcaagctgcacatgagaaatgcaagccttctctttaatctcctttgtcttgtgccgttgctt 45355639  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 241
Target Start/End: Complemental strand, 28248674 - 28248620
Alignment:
Q  187 taaggtcatcaagcagcacagtagaaatgcaatccttttctttaatctcctttgt 241  Q
    |||||||||||||| |||||  |||||||||| |||| |||||||||||||||||    
T  28248674 taaggtcatcaagctgcacatgagaaatgcaagccttctctttaatctcctttgt 28248620  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 15362221 - 15362290
Alignment:
Q  187 taaggtcatcaagcagcacagtagaaatgcaatccttttctttaatctcctttgtattgcgcctttgctt 256  Q
    |||||||||||||| |||||  |||||||||| |||| ||||||||||||||||| ||| ||| ||||||    
T  15362221 taaggtcatcaagctgcacatgagaaatgcaagccttctctttaatctcctttgtcttgtgccgttgctt 15362290  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 16735310 - 16735379
Alignment:
Q  187 taaggtcatcaagcagcacagtagaaatgcaatccttttctttaatctcctttgtattgcgcctttgctt 256  Q
    |||||||||||||| |||||  |||||||||| |||| ||||||||||||||||| ||| ||| ||||||    
T  16735310 taaggtcatcaagctgcacatgagaaatgcaagccttctctttaatctcctttgtcttgtgccgttgctt 16735379  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 43600771 - 43600840
Alignment:
Q  187 taaggtcatcaagcagcacagtagaaatgcaatccttttctttaatctcctttgtattgcgcctttgctt 256  Q
    |||||||||||||| |||||  |||||||||| |||| ||||||||||||||||| ||| ||| ||||||    
T  43600771 taaggtcatcaagctgcacatgagaaatgcaagccttctctttaatctcctttgtcttgtgccgttgctt 43600840  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 241
Target Start/End: Complemental strand, 5077408 - 5077354
Alignment:
Q  187 taaggtcatcaagcagcacagtagaaatgcaatccttttctttaatctcctttgt 241  Q
    |||||||||||||| |||||| |||||||||| |||| ||||||| |||||||||    
T  5077408 taaggtcatcaagctgcacaggagaaatgcaagccttctctttaacctcctttgt 5077354  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 241
Target Start/End: Original strand, 7411818 - 7411872
Alignment:
Q  187 taaggtcatcaagcagcacagtagaaatgcaatccttttctttaatctcctttgt 241  Q
    |||||||||||||| |||||  |||||||||| |||| |||||||||||||||||    
T  7411818 taaggtcatcaagctgcacatgagaaatgcaagccttctctttaatctcctttgt 7411872  T

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