View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3092_low_4 (Length: 382)
Name: NF3092_low_4
Description: NF3092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3092_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 98 - 365
Target Start/End: Complemental strand, 45362752 - 45362485
Alignment:
| Q |
98 |
gcaaacaactattagtaaaaaataattaaaagaaacctttttctggagagacattcaatttaacatcagaaacaagggaatcacttgaactccnnnnnnn |
197 |
Q |
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| T |
45362752 |
gcaaacaactattagtaaaaaataattaaaagaaacctttttctggagagacattcaatttaacatcagaaacaagggaatcacttgaactccaaaaaaa |
45362653 |
T |
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| Q |
198 |
catatcaagatccttcgttttcttagcagcagcaacgttttttggagagaacatttcggggtttggcgcagggtaattcccctttgtcgtagacactgaa |
297 |
Q |
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||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45362652 |
catatgaagatcctccgttttcttagcagcaacaacgttttttggagagaacatttcggggtttggcgcagggtaattcccctttgtcgtagacattgaa |
45362553 |
T |
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| Q |
298 |
ttatcataattacaagtcctcggtggtgttcctttcaaatcagaagcaccaaagttagaattacgact |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
45362552 |
ttatcataattacaagtcctcggtggtgttcctttcaaatcaaaagcaccaaagttagaattacgact |
45362485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 45362846 - 45362797
Alignment:
| Q |
1 |
ttgctccaccttcctcccctctcttgtgctcatcctcaccctccactgac |
50 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45362846 |
ttgccccaccttcctcccctctcttgtgctcatcctcaccctccactgac |
45362797 |
T |
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