View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3092_low_6 (Length: 301)

Name: NF3092_low_6
Description: NF3092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3092_low_6
NF3092_low_6
[»] chr3 (1 HSPs)
chr3 (17-291)||(5498585-5498859)
[»] chr2 (1 HSPs)
chr2 (106-233)||(27149921-27150048)
[»] chr4 (4 HSPs)
chr4 (152-277)||(24557788-24557914)
chr4 (18-88)||(24558918-24558987)
chr4 (222-256)||(24557920-24557954)
chr4 (142-231)||(37743932-37744023)
[»] chr6 (2 HSPs)
chr6 (17-110)||(34374934-34375028)
chr6 (165-245)||(23903982-23904065)
[»] chr1 (2 HSPs)
chr1 (27-110)||(12190070-12190149)
chr1 (118-163)||(12190987-12191036)
[»] chr7 (1 HSPs)
chr7 (22-54)||(26701143-26701175)


Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 17 - 291
Target Start/End: Original strand, 5498585 - 5498859
Alignment:
Q  17 aatattttatgtattattagtaacattcataaaatgttacttgtttatatattttttgtaacactttatgtattactggtaacactaataaaatatgtgg 116  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||     
T  5498585 aatattttatgtattattagtaacattcataaagtattacttgtttatattttttttgtaacactttatatattactggtaacactaataaaatatgtga 5498684  T
Q  117 cggtctttaaacggttcaatgatttcataaaataaattaacttgattagttatattctaccgttttctaaaaactgtgacacaatcttttaagtaaacat 216  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5498685 cggtctttaaacggttcaacgatttcataaaataaattaatttgattagttatattctacagttttctaaaaactgtgacacaatcttttaagtaaacat 5498784  T
Q  217 atggaattagttcatcatattcaccaaatgatagggatatgtcacaaaaggaagataaaaaacgacagtgagcaa 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5498785 atggaattagttcatcatattcaccaaatgatagggatatgtcacaaaaggaagataaaaaacgacagtgagcaa 5498859  T

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Target: chr2 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 106 - 233
Target Start/End: Complemental strand, 27150048 - 27149921
Alignment:
Q  106 aaaatatgtggcggtctttaaacggttcaatgatttcataaaataaattaacttgattagttatattctaccgttttctaaaaactgtgacacaatcttt 205  Q
    ||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  27150048 aaaatatgtgatggtctttaaacggttcaaagatttcataaaataaattaacttgattggttatattctacagttttctaaaaactgtgacacaatcttt 27149949  T
Q  206 taagtaaacatatggaattagttcatca 233  Q
    |||||||||||||| |||||||||||||    
T  27149948 taagtaaacatatgaaattagttcatca 27149921  T

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Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 152 - 277
Target Start/End: Complemental strand, 24557914 - 24557788
Alignment:
Q  152 attaacttgattagttatattctaccgttttctaaaaactgtgacacaatcttttaagtaaacatatggaattagttcatcatattcaccaaatgatagg 251  Q
    |||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24557914 attaacttgattggttatattctatagttttctaaaaactgtgacacaatcttttaagtaaacttatggaattagttcatcatattcaccaaatgatagg 24557815  T
Q  252 gatatgtc-acaaaaggaagataaaaa 277  Q
    ||||| || ||||||||||||| ||||    
T  24557814 gatatatcaacaaaaggaagatcaaaa 24557788  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 24558987 - 24558918
Alignment:
Q  18 atattttat-gtattattagtaacattcataaaatgttacttgtttatatattttttgtaacactttatgta 88  Q
    ||||||||| ||||||| ||||||||||||||| ||||||||||||  |||||||||| |||||||| ||||    
T  24558987 atattttatagtattatcagtaacattcataaattgttacttgttt--atattttttggaacactttttgta 24558918  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 256
Target Start/End: Complemental strand, 24557954 - 24557920
Alignment:
Q  222 attagttcatcatattcaccaaatgatagggatat 256  Q
    |||||||||||||||||||||||||||||||||||    
T  24557954 attagttcatcatattcaccaaatgatagggatat 24557920  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 231
Target Start/End: Complemental strand, 37744023 - 37743932
Alignment:
Q  142 cataaaataaattaacttgattagttatattctaccgttttctaaaaactgtgacacaatcttt---taagtaaacatatggaattagttcat 231  Q
    |||||||||||||||||||||  ||||| || ||  |||||||||||| |||||||||||||||    |||||||||  ||||||||||||||    
T  37744023 cataaaataaattaacttgatcggttattttttaa-gttttctaaaaattgtgacacaatctttcaagaagtaaacaagtggaattagttcat 37743932  T

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Target: chr6 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 34374934 - 34375028
Alignment:
Q  17 aatattttat-gtattattagtaacattcataaaatgttacttgtttatatattttttgtaacactttatgtattactggtaacactaataaaat 110  Q
    |||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||    
T  34374934 aatattttatagtattatgagtaacattcataaagtgttacttgtttatatattttttttaacactttttgtattactgataacactaataaaat 34375028  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 245
Target Start/End: Complemental strand, 23904065 - 23903982
Alignment:
Q  165 gttatattctaccgttttctaaaaactgtgacacaatctttt---aagtaaacatatggaattagttcatcatattcaccaaat 245  Q
    ||||| || ||| |||||||||||||||| ||| |||||||    |||||||||  |||||||||||||| |||||| ||||||    
T  23904065 gttatcttttacagttttctaaaaactgttacaaaatctttctagaagtaaacaagtggaattagttcattatattcgccaaat 23903982  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 12190070 - 12190149
Alignment:
Q  27 gtattattagtaacattcataaaatgttacttgtttatatattttttgtaacactttatgtattactggtaacactaataaaat 110  Q
    ||||||||||||||||  ||||| ||||||| |||||||    |||| |||||||||   ||||||| ||||||||||||||||    
T  12190070 gtattattagtaacatatataaagtgttactcgtttata----ttttttaacacttttgatattactagtaacactaataaaat 12190149  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 163
Target Start/End: Original strand, 12190987 - 12191036
Alignment:
Q  118 ggtctttaaacggttcaatgatttcataaaata----aattaacttgatt 163  Q
    |||||||||||||||||| ||||||||||||||    |||||||||||||    
T  12190987 ggtctttaaacggttcaacgatttcataaaatatataaattaacttgatt 12191036  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 26701143 - 26701175
Alignment:
Q  22 tttatgtattattagtaacattcataaaatgtt 54  Q
    |||||||||||||||||||||||| ||||||||    
T  26701143 tttatgtattattagtaacattcagaaaatgtt 26701175  T

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