View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3093_high_10 (Length: 319)
Name: NF3093_high_10
Description: NF3093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3093_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 14 - 301
Target Start/End: Original strand, 54804371 - 54804657
Alignment:
| Q |
14 |
agattctcagagtgtattatttcaatcagataataaagtttctcttctatcagggttaatgggatttggaactattattaaaaaagatagcaaaagaagt |
113 |
Q |
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| T |
54804371 |
agattctcagagtgtattatttcaatcagataataaagtttctcttctatcagggttaatggcatttggaactattattaaaaaagatagcaaaagaagt |
54804470 |
T |
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| Q |
114 |
agcaagtcnnnnnnntacatgattaatttccttattttacccattgtattaaattttgttatatatttggtattccaatctagaagaagcatatagcttg |
213 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
54804471 |
agcaagtcaaaaaa-tacatgattaatttccttattttgcccattgtattaaattttgttatatatttggtattcccctctagaagaagcatatagcttg |
54804569 |
T |
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| Q |
214 |
gaatacgcaattgaagagaaactttttggtgcttgtcaattgttttagagttaaaatatactaactgataagattcccatgcctattg |
301 |
Q |
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| T |
54804570 |
gaatacgcaattgaagagaaactttttggtgcttgtcaattgttttagagttaaaatatactaactgataagattcccatgcctattg |
54804657 |
T |
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