View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3093_high_13 (Length: 282)
Name: NF3093_high_13
Description: NF3093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3093_high_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 9147454 - 9147709
Alignment:
| Q |
1 |
aagtttccacttaatatgtccaacaaaaaccatccatgcatgatcatgcatctactacttaaataaaattgctccatttgtcttcctttccattttggtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9147454 |
aagtttccacttaatatgtccaacaaaaaccatccatgcatgatcatgcatctactacttaaataaaattgctccatttgtcttcctttccattttggtt |
9147553 |
T |
|
| Q |
101 |
tggatttgaaaaacaatatattatatatgcatgtgtgtgggtataagtatgatattgttatgtaagaactttatgtatcgttaacaaataaagagattta |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9147554 |
tggatttgaaaaacaatatattatatgtgcatgtgtgtgggtatatgtatgatattgttatgtaagaactttatgtatcgttaacaaataaagagattta |
9147653 |
T |
|
| Q |
201 |
ctctactaatagaattgcacatatttgcatatggtcctgagcctcttaatttgcgg |
256 |
Q |
| |
|
|||||||||||||| | || ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
9147654 |
ctctactaatagaactacatatatttgcatatggtcctgcgcctcttaatttgcgg |
9147709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 38 - 253
Target Start/End: Original strand, 9141359 - 9141576
Alignment:
| Q |
38 |
gcatgatcatgcatctactacttaaataaaattgctc--catttgtcttcctttccattttggtttggatttgaaaaacaatatattatatatgcatgtg |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| | |||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
9141359 |
gcatgatcatgcatctactacttaaataaaattgctctccatctgtcttcctttccatctaggtttggaattgaaaaacaagatattatatatgcatgtg |
9141458 |
T |
|
| Q |
136 |
tgtgggtataagtatgatattgttatgtaagaactttatgtatcgttaacaaataaagagatttactctactaatagaattgcacatatttgcatatggt |
235 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
9141459 |
tgtgggtatatgtgtgatattgttatgtaagaactttatgtattgttaataaataaagagatttcctctactaatagaactgcacatatttgcatatggt |
9141558 |
T |
|
| Q |
236 |
cctgagcctcttaatttg |
253 |
Q |
| |
|
|||| ||||||| ||||| |
|
|
| T |
9141559 |
cctgcgcctctttatttg |
9141576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University