View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3093_high_5 (Length: 476)
Name: NF3093_high_5
Description: NF3093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3093_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 17 - 454
Target Start/End: Complemental strand, 48848451 - 48848014
Alignment:
| Q |
17 |
acaagtcacgtttaacataattattttttgtagacgatctattatgcatcatcttccaagcatgcataaaaaatttcagagctacatgtttaatgtacac |
116 |
Q |
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| T |
48848451 |
acaagtcacgtttaacataattattttttgtagacgatctattatgcatcatcttccaagcatgcataaaaaatttcagagctacatgtttaatgtacac |
48848352 |
T |
|
| Q |
117 |
aatctcatgaaatagagaaacatcctccaactcaacgcgtgttagaatattatacacattttcaaagaagtaaatatcatttaaagttgaacaccacatc |
216 |
Q |
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| T |
48848351 |
aatctcatgaaatagagaaacatcct-caactcaacgcgtgttagaatatcgtacacattttcaaagaagtaaatatcatttaaagttgaacaccacatc |
48848253 |
T |
|
| Q |
217 |
cattt-tcctcctcacctattagtaaaatcaaacgatccagcgnnnnnnnncactcctccaccaaacccattttccaatgaaacgaacccctacgccaac |
315 |
Q |
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| T |
48848252 |
tatttatcctcctcacctattagtaaattcaaacgatccagcgaaggaaaacactcctccaccaaacccattttccaatgaaacgaacccctacgccaac |
48848153 |
T |
|
| Q |
316 |
tccacccaatatctcacacaacagacccctttccacccagtatccaaccaaatttgtcagttttcaacaaactatttaacaatagtttgaccttatccac |
415 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48848152 |
tccacccagtatctcacacaacagacccctttccacccagtatccaaccaaatttgtcagttttcaacaaactatttaacaatagtttgaccttatccac |
48848053 |
T |
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| Q |
416 |
cccgaacaaaacaaatatctctccaccaaagacgaacct |
454 |
Q |
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| T |
48848052 |
cccgaacaaaacaaatatctctccaccaaagacgaacct |
48848014 |
T |
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