View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3093_low_11 (Length: 307)
Name: NF3093_low_11
Description: NF3093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3093_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 11 - 293
Target Start/End: Original strand, 29596366 - 29596648
Alignment:
| Q |
11 |
cagagaatcgggttttcggtcactacactagggttctcgtggacctagattgtaaaatgaaccactgcaagcatatgactaacagcacaaaagaaactgt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29596366 |
cagagaatcgggttttcggtcactacactagggttctcgtggacctagattgtaaaatgaaccactgcaagcatatgactaacagcacaaaagaaactgt |
29596465 |
T |
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| Q |
111 |
taagatattaaataagagcatatgtgcttttcacactacagaagtagaaaccatgttatattctcttgatgtttagctttctgaaattagcagaaataat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29596466 |
taagatattaaataagagcatatgtgcttttcacactacagaagtagaaaccatgttatattctcttgatgtttagctttctgaaattagcagaaataat |
29596565 |
T |
|
| Q |
211 |
tcaaagattgatagagaattaccaatcaacaaaacattggggaataaccaaaagtcactaaattaatgagaggagtacatttt |
293 |
Q |
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| T |
29596566 |
tcaaagattgatagagaattaccaatcaacaaaacattggggaataaccaaaagtcactaaattaatgagaggagtacatttt |
29596648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 150 - 293
Target Start/End: Complemental strand, 29648785 - 29648642
Alignment:
| Q |
150 |
agaagtagaaaccatgttatattctcttgatgtttagctttctgaaattagcagaaataattcaaagattgatagagaattaccaatcaacaaaacattg |
249 |
Q |
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|||||||||| ||||||||||||||||||||| | ||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
29648785 |
agaagtagaagccatgttatattctcttgatgctgagcttactggaattagcagaaataattcaaagattggtagagaattaccaatcaacaaaactttg |
29648686 |
T |
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| Q |
250 |
gggaataaccaaaagtcactaaattaatgagaggagtacatttt |
293 |
Q |
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| T |
29648685 |
gggaacaaccaaaagacactaaattaataagaagagtacatttt |
29648642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 150 - 292
Target Start/End: Complemental strand, 29643566 - 29643424
Alignment:
| Q |
150 |
agaagtagaaaccatgttatattctcttgatgtttagctttctgaaattagcagaaataattcaaagattgatagagaattaccaatcaacaaaacattg |
249 |
Q |
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|||||||||| ||||||||||||||||||||| | ||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
29643566 |
agaagtagaagccatgttatattctcttgatgctgagcttactggaattagcagaaataattcaaagattggtagagaattaccaatcaacaaaactttg |
29643467 |
T |
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| Q |
250 |
gggaataaccaaaagtcactaaattaatgagaggagtacattt |
292 |
Q |
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| T |
29643466 |
gggaacaaccaaaagaaactaaattaataagaagagtacattt |
29643424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 72 - 145
Target Start/End: Complemental strand, 29648911 - 29648838
Alignment:
| Q |
72 |
ccactgcaagcatatgactaacagcacaaaagaaactgttaagatattaaataagagcatatgtgcttttcaca |
145 |
Q |
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|||||| ||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||| ||||||||| |
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| T |
29648911 |
ccactgaaagcatatgactaacagcacaaatgaagttgttaagatattaaatgagagcatatgtacttttcaca |
29648838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 152 - 258
Target Start/End: Complemental strand, 19820260 - 19820154
Alignment:
| Q |
152 |
aagtagaaaccatgttatattctcttgatgtttagctttctgaaattagcagaaataattcaaagattgatagagaattaccaatcaacaaaacattggg |
251 |
Q |
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|||||||| ||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
19820260 |
aagtagaagccatgatatattctcttgatgccaagcttgctgaaattagcagaaataattcaaagattgatagggaattaccaatcaacaaaactttgga |
19820161 |
T |
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| Q |
252 |
gaataac |
258 |
Q |
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||||||| |
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| T |
19820160 |
gaataac |
19820154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 20863668 - 20863729
Alignment:
| Q |
191 |
ctgaaattagcagaaataattcaaagattgatagagaattaccaatcaacaaaacattgggg |
252 |
Q |
| |
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|||||||| ||||||| ||||||||||||||||| |||| ||||||||| ||||| |||||| |
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| T |
20863668 |
ctgaaatttgcagaaagaattcaaagattgatagggaatcaccaatcaagaaaactttgggg |
20863729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 24253968 - 24254029
Alignment:
| Q |
191 |
ctgaaattagcagaaataattcaaagattgatagagaattaccaatcaacaaaacattgggg |
252 |
Q |
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|||||||| || |||| ||||||||| ||||||| |||||| ||||||||||||| |||||| |
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| T |
24253968 |
ctgaaatttgctgaaagaattcaaagtttgatagggaattatcaatcaacaaaactttgggg |
24254029 |
T |
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