View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3093_low_14 (Length: 276)
Name: NF3093_low_14
Description: NF3093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3093_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 18725056 - 18725314
Alignment:
| Q |
18 |
gtgattgcattccaactagagtaaatcttcttccacatggagtctctcatgcacatctacatgtgtgaatgctatatacaagatgcttgcttaccacccc |
117 |
Q |
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| T |
18725056 |
gtgattgcattccaactagagtaaatcttcttccacatggagtctctcatgcacatctacatgtgtgaatgctatatacaagatgcttccttaccacccc |
18725155 |
T |
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| Q |
118 |
cnnnnnnnnn--------gctcacgaacaatctgttaagagcatgcagaaagtaacat--ggaatgatatacatcctctaccaatacaagcagacagttt |
207 |
Q |
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||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
18725156 |
ttttttttttttttttttgcttacgaacaatctgttaagagcatgcagaaagtaacatatggaatgatatacatcctctaccaatacaagcagacagttt |
18725255 |
T |
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| Q |
208 |
caaggacattttgttcttgatttgcagcactcgatcaaaagaacaatggaacctctgtg |
266 |
Q |
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| T |
18725256 |
caaggacattttgttcttgatttgcagcactcgatcgaaagaacaatggaacctctgtg |
18725314 |
T |
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