View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3093_low_16 (Length: 272)

Name: NF3093_low_16
Description: NF3093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3093_low_16
NF3093_low_16
[»] chr8 (2 HSPs)
chr8 (10-256)||(28604200-28604446)
chr8 (10-240)||(27725442-27725672)


Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 10 - 256
Target Start/End: Complemental strand, 28604446 - 28604200
Alignment:
Q  10 aatataaaactgattcagttgacgtgaaaagttagctacagaatttggtaaataaccaccaaagttgtttagatttaaatccaacacttgtaaatttgtg 109  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28604446 aatataaaactgactcagttgacgtgaaaagttagctacagagtttggtaaataaccaccaaagttgtttagatttaaatccaacacttgtaaatttgtg 28604347  T
Q  110 caatttgtcaaagatgttaagaaatccaagtccttggatgaattactccctagatgattatattccatagcaatagaccagatatctttgagatttccta 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28604346 caatttgtcaaagatgttaagaaatccaagtccttggatgaattactccctagatgattatattccatagcaatagaccagatatctttgagatttccta 28604247  T
Q  210 ttccaattggaacttgtccaacaaagttattcctagggatattaaat 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  28604246 ttccaattggaacttgtccaacaaagttattcctagggatattaaat 28604200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 10 - 240
Target Start/End: Original strand, 27725442 - 27725672
Alignment:
Q  10 aatataaaactgattcagttgacgtgaaaagttagctacagaatttggtaaataaccaccaaagttgtttagatttaaatccaacacttgtaaatttgtg 109  Q
    ||||| |||||| || |||||||  || ||||| |||||||| || |||||| |||||||||||||||| |||||||||| ||||||| |||| ||||||    
T  27725442 aatatcaaactggtttagttgactagataagttggctacagatttaggtaaagaaccaccaaagttgttcagatttaaatgcaacactcgtaagtttgtg 27725541  T
Q  110 caatttgtcaaagatgttaagaaatccaagtccttggatgaattactccctagatgattatattccatagcaatagaccagatatctttgagatttccta 209  Q
    || |||||||||||||| |||||||||||||| |  ||||||||| | || |||||||| | | |||||||||  ||||| | ||||||||||| |||||    
T  27725542 cagtttgtcaaagatgtcaagaaatccaagtcatgagatgaattattaccaagatgattgtttcccatagcaactgaccatacatctttgagatatccta 27725641  T
Q  210 ttccaattggaacttgtccaacaaagttatt 240  Q
    ||||  | |||||| |||| |||| ||||||    
T  27725642 ttccggtgggaactggtccgacaatgttatt 27725672  T

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