View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3093_low_19 (Length: 247)
Name: NF3093_low_19
Description: NF3093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3093_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 55154365 - 55154161
Alignment:
| Q |
1 |
acactagttttgttcttttagttaattacaaaaagatggccaatcctttcaaaactttatcatattttctttcatgtcattaaaatcaacaaggcaccaa |
100 |
Q |
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| T |
55154365 |
acactagttttgttcttttagttaattacaaaaagatggccaatcctttcaaaacttaatcatattttctttcatgtcattaaaatcaacaaggcaccaa |
55154266 |
T |
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| Q |
101 |
gttaatgtagttcatcatcatcagttcaaagaaaacagacgtattggttgctgagtaatcacatcacagtacaattaaagattgatagtgttcaatatgt |
200 |
Q |
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| T |
55154265 |
gttaatgtagttcatc---atcagttcaaagaaaacagacgtattggttgctgagtaatcacatcacagtacaattaaagattgatagtattcaataagt |
55154169 |
T |
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| Q |
201 |
atataaat |
208 |
Q |
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|||||||| |
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| T |
55154168 |
atataaat |
55154161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 55173940 - 55173790
Alignment:
| Q |
11 |
tgttcttttagttaattacaaaaa--gatggccaatcctttcaaaactttatcatattttct-ttcatgtcattaaaatcaacaaggcaccaagttaatg |
107 |
Q |
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|||| |||| |||||||||||||| |||||||||||||| ||||| ||| | ||| ||||| ||||||| | ||||||||||| |||||||||| |||| |
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| T |
55173940 |
tgttgttttcgttaattacaaaaaaagatggccaatccttgcaaaagtttcttatactttctgttcatgttagtaaaatcaacagggcaccaagtcaatg |
55173841 |
T |
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| Q |
108 |
tagttcatcatcatcagttcaaagaaaacagacgtattggttgctgagtaatca |
161 |
Q |
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| T |
55173840 |
cag---gtcatccccagttgaaagaaaacaaacatattggttgctgaataatca |
55173790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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