View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3093_low_2 (Length: 575)
Name: NF3093_low_2
Description: NF3093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3093_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 500; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 1 - 555
Target Start/End: Original strand, 32399717 - 32400271
Alignment:
| Q |
1 |
acataggacttagaaattcataatgacacgtcgcaactttaacatgattgtgctagtgatccgatctagtgcattcaagcctgctacatcaacaattagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32399717 |
acataggacttagaaattcataatgacacgtcgcaactttaacatgattgtgctagtgatccaatctagtgcattcaagcctgctacatcaacaattagc |
32399816 |
T |
|
| Q |
101 |
aagaaagaaaaacaatatcgtacctcagctccaagcaagtaagcctgaactgcagaatggccaaacggatcaatctgccagccaactcttggattcttac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32399817 |
aagaaagaaaaacaatatcgtacctcagctccaagcaagtaagcctgaactgcagaatggccaaacggatcaatctgccagccaactcttggattcttac |
32399916 |
T |
|
| Q |
201 |
caaactcatctttgataaattgatgcccaagagtggtctgatcaatcaggtcaatgtaatgcggggtggcctcgtcatgcatgcacataccaccatttct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32399917 |
caaactcatctttgataaattgatgcccaagagtggtctgatcaatcaggtcaatgtaatgcggggtggcctcgtcatgcatgcacataccaccatttct |
32400016 |
T |
|
| Q |
301 |
tcnnnnnnnnnnnnncaacaataacatgataatcaaattcaaaagtcaccaacttgcatctaaatctaatctatgtagaaccattaatcatggaaatcca |
400 |
Q |
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|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32400017 |
tcaaaaaaccaaaaacaacaataacataataatcaaattcaaaagtcaccaacttgcatctaaatctaatctatgtagaaccattaatcatggaaatcca |
32400116 |
T |
|
| Q |
401 |
ttggattccctgcaaccaaaataacacaaagtcactaaatgacaatcaaacagcttgcattcaaaaatctgatttatccaacttaaaatatgaactgtct |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32400117 |
ttggattccctgcaaccaaaataacacaaagtcactaaatgacaatcaaacagcttgcattcaaaaatctgatttatccaacttaaaatctgaactgtct |
32400216 |
T |
|
| Q |
501 |
gatcttcatctaaagattttgacttactaattttggtgaattttaaagtacatgc |
555 |
Q |
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| T |
32400217 |
gatcttcatctaaagattttgacttactaattttggtgagttttaaagtacatgc |
32400271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 140 - 261
Target Start/End: Original strand, 32385496 - 32385617
Alignment:
| Q |
140 |
taagcctgaactgcagaatggccaaacggatcaatctgccagccaactcttggattcttaccaaactcatctttgataaattgatgcccaagagtggtct |
239 |
Q |
| |
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|||||||| || |||||||| |||||||| ||||| ||||| |||| ||||||| || | | ||||| ||||| | |||| | || ||||| || |||| |
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| T |
32385496 |
taagcctgcacagcagaatgtccaaacgggtcaatttgccaaccaattcttggagtcaaatcgaactcctctttcagaaatcggtgtccaagtgtagtct |
32385595 |
T |
|
| Q |
240 |
gatcaatcaggtcaatgtaatg |
261 |
Q |
| |
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||||||||| ||| |||||||| |
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| T |
32385596 |
gatcaatcatgtctatgtaatg |
32385617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 111 - 300
Target Start/End: Original strand, 45067569 - 45067758
Alignment:
| Q |
111 |
aacaatatcgtacctcagctccaagcaagtaagcctgaactgcagaatggccaaacggatcaatctgccagccaactcttggattcttaccaaactcatc |
210 |
Q |
| |
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||||| || ||||||| ||||| | |||||| ||||| ||||||||||| ||||| |||||||| ||||| || | ||||||| | | || || | || |
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| T |
45067569 |
aacaaaatggtacctctgctcccaacaagtaggcctgcactgcagaatgtccaaatggatcaatttgccatcctattcttggagttatcccgaatacttc |
45067668 |
T |
|
| Q |
211 |
tttgataaattgatgcccaagagtggtctgatcaatcaggtcaatgtaatgcggggtggcctcgtcatgcatgcacataccaccatttct |
300 |
Q |
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|||||| ||| |||| ||||| || ||||||||||||| |||||||||||| | | ||||| || ||||| ||||||||||||||||| |
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| T |
45067669 |
tttgatgaatcgatgtccaagggttgtctgatcaatcatgtcaatgtaatgtgcagcagcctcatcgtgcatacacataccaccatttct |
45067758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 520
Target Start/End: Complemental strand, 29816255 - 29816218
Alignment:
| Q |
483 |
ttaaaatatgaactgtctgatcttcatctaaagatttt |
520 |
Q |
| |
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||||||||| ||||||||||||||||||||||| |||| |
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| T |
29816255 |
ttaaaatataaactgtctgatcttcatctaaaggtttt |
29816218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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