View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3093_low_21 (Length: 245)
Name: NF3093_low_21
Description: NF3093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3093_low_21 |
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| [»] scaffold0064 (3 HSPs) |
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| [»] scaffold0116 (1 HSPs) |
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Alignment Details
Target: scaffold0064 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 65 - 191
Target Start/End: Complemental strand, 21274 - 21148
Alignment:
| Q |
65 |
caaatacaagtgtttgccaagaaattccttcttacagtaggaatatnnnnnnnngagatatgttaatttgcacaatttatttttagtgggtgagttgtct |
164 |
Q |
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| T |
21274 |
caaaaacatgtgtttccccagaaattccttcttacagtaggaatataaaaaacatagatatgttaatttgcacagtttatttttagtgggtgagttgtct |
21175 |
T |
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| Q |
165 |
tgttaaattctaagtgcgtttattgat |
191 |
Q |
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| T |
21174 |
tgttaaattctaagtgcgtctattgat |
21148 |
T |
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Target: scaffold0064; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 20188 - 20155
Alignment:
| Q |
191 |
tgaaaatctttatattaaggtaaaatgcaggtat |
224 |
Q |
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| T |
20188 |
tgaaaatctttatattaaggtaaaatgcaggtat |
20155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 37
Target Start/End: Complemental strand, 21395 - 21364
Alignment:
| Q |
6 |
aacagtacatcaacaaattttgagatgtaaat |
37 |
Q |
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| T |
21395 |
aacagtacatcaacaaattttgagatgtaaat |
21364 |
T |
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Target: scaffold0116 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0116
Description:
Target: scaffold0116; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 10029 - 9978
Alignment:
| Q |
121 |
gatatgttaatttgcacaatttatttttagtgggtgagttgtcttgttaaat |
172 |
Q |
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| T |
10029 |
gatatgttaatttgcacaatttgtttttagtgggtgagttgtcttgttaaat |
9978 |
T |
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