View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3093_low_22 (Length: 243)
Name: NF3093_low_22
Description: NF3093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3093_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 9147407 - 9147166
Alignment:
| Q |
1 |
attcctgaatgcagtttgtgcatgagatccagagagaaaacaccagccatatttaatatctgcgtttggattacgagcgcaaaagcttccacttcctttc |
100 |
Q |
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| T |
9147407 |
attcctgaatgcagtttgtgcatgagatccagagagaaaacaccagccatatttaatatctgtgtttggattacgagcgcaaaagcttccacttcctttc |
9147308 |
T |
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| Q |
101 |
ttcttgcagtcggcatgagactggcataagttaggatcttcctccatcttcttcatca-----------------taatctctgcaaaatccattcagaa |
183 |
Q |
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| T |
9147307 |
ttcttgcagtcggcatgagactggcataagttaggatcttcctccatcttcttcatcatatcatgttcagatatgtaatctctgcaaaatccattcagaa |
9147208 |
T |
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| Q |
184 |
atgttgcggggtggcagtaacaacccggttcacgctctgacc |
225 |
Q |
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| T |
9147207 |
atgtttcggggtggcagtaacaacccggttcacgttctgacc |
9147166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 68 - 144
Target Start/End: Original strand, 6803025 - 6803101
Alignment:
| Q |
68 |
ggattacgagcgcaaaagcttccacttcctttcttcttgcagtcggcatgagactggcataagttaggatcttcctc |
144 |
Q |
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| T |
6803025 |
ggataacgagcgcaaaaactcccacttcctttcttcgtgcaatcagcatgagactgacataagttaggatgttcctc |
6803101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 134
Target Start/End: Complemental strand, 7947172 - 7947075
Alignment:
| Q |
37 |
aaaacaccagccatatttaatatctgcgtttggattacgagcgcaaaagcttccacttcctttcttcttgcagtcggcatgagactggcataagttag |
134 |
Q |
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| T |
7947172 |
aaaacaccatccatatttgatatcaggattaggataacgagcacaaaagctaccacttcctttcttcgtgcaatcagcatgagattgacataagttag |
7947075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 134
Target Start/End: Complemental strand, 7941621 - 7941524
Alignment:
| Q |
37 |
aaaacaccagccatatttaatatctgcgtttggattacgagcgcaaaagcttccacttcctttcttcttgcagtcggcatgagactggcataagttag |
134 |
Q |
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| T |
7941621 |
aaaacaccatccatattcgatatcaggattaggataacgagcacaaaagctaccacttcctttcttcgtgcaatcagcatgagattgacataagttag |
7941524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 7950547 - 7950483
Alignment:
| Q |
80 |
caaaagcttccacttcctttcttcttgcagtcggcatgagactggcataagttaggatcttcctc |
144 |
Q |
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| T |
7950547 |
caaaagcttccactttccttcttcgtgcaatcagcgtgagactgacataagttaggatgttcctc |
7950483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 156
Target Start/End: Complemental strand, 12110274 - 12110191
Alignment:
| Q |
73 |
acgagcgcaaaagcttccacttcctttcttcttgcagtcggcatgagactggcataagttaggatcttcctccatcttcttcat |
156 |
Q |
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| T |
12110274 |
acgagcacaaaagttcccacttcccttcttgatgcactcggcatgagtttgacataagttaggatgttcctcgatcatcttcat |
12110191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 156
Target Start/End: Complemental strand, 12123981 - 12123862
Alignment:
| Q |
37 |
aaaacaccagccatatttaatatctgcgtttggattacgagcgcaaaagcttccacttcctttcttcttgcagtcggcatgagactggcataagttagga |
136 |
Q |
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| T |
12123981 |
aaaacaccatccatattcgatatcagcattagcataacgggcacaaaagtttccacttcccttcttgaagcattcagcatgagtttggcataagttagga |
12123882 |
T |
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| Q |
137 |
tcttcctccatcttcttcat |
156 |
Q |
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| T |
12123881 |
tgttcctcgatcatcttcat |
12123862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 12128109 - 12128045
Alignment:
| Q |
73 |
acgagcgcaaaagcttccacttcctttcttcttgcagtcggcatgagactggcataagttaggat |
137 |
Q |
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| T |
12128109 |
acgagcacaaaagtttccacttcccttcttgatgcactcggcatgagtttgacataagttaggat |
12128045 |
T |
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