View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3093_low_3 (Length: 556)
Name: NF3093_low_3
Description: NF3093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3093_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 535
Target Start/End: Original strand, 935991 - 936530
Alignment:
| Q |
1 |
attttgttttctagagacatacacatactgtcgccacccattaagacttattcttcattttcttgcaaagcccgccatagacttaccacctttgacctta |
100 |
Q |
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| T |
935991 |
attttgttttctagagacatacacatattgtcgccacccattaagacttattcttcattttcttgcaaagcccgccatagacttaccacctttgacctta |
936090 |
T |
|
| Q |
101 |
aaaactct--ttctcttcaacacgttttttgttgttcttgttcttaaatccttcttcaatatcatttacaacc-------------ttaaacttgttaat |
185 |
Q |
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|||||||| ||||||||||||||||||||||| || | ||||||| |||||||||||| ||||| |||||| |||||||||||||| |
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| T |
936091 |
aaaactctctttctcttcaacacgttttttgttctt--tcttcttaactccttcttcaatgtcattaacaaccccttatttacaccttaaacttgttaat |
936188 |
T |
|
| Q |
186 |
aataatcattccaaaaatttctacaaaacnnnnnnnnnnnngctcaaaacctagttcctttgtttaacatatcattcatt---------gtagtaacact |
276 |
Q |
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| T |
936189 |
a-taatcattccaaaaatttctacaaaacttttttctttttgctcaaaacctagttcctttgtttaacatatcattcatttcattcattgtagtaacact |
936287 |
T |
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| Q |
277 |
ttctacttcttgcttaattannnnnnnnnnnnnnnnnnnnnnnngtagcaaaagtctaaaatgttctaaacatgtctgaagaatctttgaattcagacgc |
376 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
936288 |
ttctacgtcttgcttaattatttttgttttttcaagtgttttttgtagcaaaagtctaaaatgttctaaacatgtctgaagaatctttgaattcagacgc |
936387 |
T |
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| Q |
377 |
gttttaactaagaaggaacctctcaaagcagacaatacctcggaaagcagtgtagcagatttgaggtcggagcagataaaacttcatatggattctaaga |
476 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
936388 |
gttttaactaag----------------cagacaatacctcggaaagcagtgtagcagatttgaggtcggagcagataaaacttcatatggattctaaga |
936471 |
T |
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| Q |
477 |
ggccacttttgttacaatctccaagaacaccaaatgatcaatatattcctacaataccg |
535 |
Q |
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| T |
936472 |
ggccacttttgttacaatctccaagaacaccaaatgatcaatatattcctacaataccg |
936530 |
T |
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