View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3093_low_6 (Length: 449)
Name: NF3093_low_6
Description: NF3093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3093_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 420
Target Start/End: Original strand, 27676188 - 27676590
Alignment:
| Q |
18 |
tctgcttatatgtatctagctatatctaccagtctagtaatgaaagatctgtgccaatgccaagcatgttgtagattttatttgcgcatgcacttgtgca |
117 |
Q |
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| T |
27676188 |
tctgcttatatgtatcta--tatatctaccagtctagtaatgaaagatctgtgccaatgccaagcatgttgtagattttatttgcgcatgcacttgtgca |
27676285 |
T |
|
| Q |
118 |
cgctttggctcgtgcatccacaaaaccaaaatcaccttaatattattaatttaatattttagtcaaactcaaactat--ttaatgcacttgtgttgttgn |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
27676286 |
cgctttggctcgtgcatccacaaaaccaaaatcaccttaatattattaatttaatattttagtcaaactcaaactatagttaatgcacttgtgttgttgt |
27676385 |
T |
|
| Q |
216 |
nnnnnncatgcaaaacgcaacgtaaacgtgccacgcgaaatgtttctgtcgttttgttcggtaactgaccatggtgcgcgtgtgtagggttttgcccaaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27676386 |
ttttttcatgcaaaacgcaacgtaaacgtgccacgcgaaatgtttctgtcgttttgttcggtaactgaccatggtgcgcgtgtgtagggttttgcccaaa |
27676485 |
T |
|
| Q |
316 |
gcgatgggagatccaattggaatttgacacgtggctatatgtctaactactagtagcgaccatcacacagttatagccgccagtggcgtgcttctgctga |
415 |
Q |
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|||||||| ||||||||||||| |||||||||||||| |||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
27676486 |
gcgatggggaatccaattggaatatgacacgtggctatttgtccaactactagtagcgactatcacagagttatagccgccagtggcgtgcttctgctga |
27676585 |
T |
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| Q |
416 |
cttct |
420 |
Q |
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| T |
27676586 |
cttct |
27676590 |
T |
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