View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3095_high_13 (Length: 353)
Name: NF3095_high_13
Description: NF3095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3095_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 23228367 - 23228030
Alignment:
| Q |
1 |
acacttcaatttgcctctaacatggtattctggagggtttgaaacttttcggattgtatgtgcaaaagtattgtacactaatttagcttcaagattccga |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
23228367 |
acacttcaattttcctctaacatggtattctggagggtttgaaacttttcggattgtatgtgcaaaagtattgtacactaactcagcttcaagattccga |
23228268 |
T |
|
| Q |
101 |
aaagtctttttacaagctctggactggcataagcataattctatccttgaattcagtttttacattgtttagatttaggaagtcgaattactgttcggct |
200 |
Q |
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|||||||||||||||||||||||||||||| | ||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
23228267 |
aaagtctttttacaagctctggactggcattaacataattttatcattgaattcagtttttacattgtttagatttaagaagtcgaattactattcggct |
23228168 |
T |
|
| Q |
201 |
tatagaatctaaacaaagggtattttggatggaaaaagtaataattaattttataacgacccactaaaacccatgaaggctccgcgcctccgccactggt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
23228167 |
tatagaatctaaacaaagggtattttggatggaaaaagtaacaattaattttttaacgacccactaaaacccatgaaggctccgcgcctccgccaccggt |
23228068 |
T |
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| Q |
301 |
tgtagatgtaattaggggaagagattcatttttcacat |
338 |
Q |
| |
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||||||| || ||||||||||||||||||||||||||| |
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| T |
23228067 |
tgtagatatagttaggggaagagattcatttttcacat |
23228030 |
T |
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